Return to main results Retrieve Phyre Job Id

Job DescriptionP36943
Confidence70.78%DateWed Jan 25 15:20:51 GMT 2012
Rank9Aligned Residues128
% Identity14%Templatec2x27X_
PDB info PDB header:membrane proteinChain: X: PDB Molecule:outer membrane protein oprg; PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   159160.........170.........180.........190.........200. ........210.........220...
Predicted Secondary structure 










..







.............
Query SS confidence 










































. .





















. . . . . . . . . . . . .
Query Sequence  DDRTQSNIGFGWRHFSGNDWMAGVNTFIDHDLSRSHTRIGVGA. . EYWRDYLKLSANGYIRASGWKK. . . . . . . . . . . . .
Query Conservation 
 
   




 
       


 
 


 
 
  
 
 


 ..
   
 
 
 

 
  

 
  .............
Alig confidence 












..



























..





















.............
Template Conservation        
   

 ..
     

                              
               

 
 
 
   
Template Sequence  DSDTQLGLTFTYM. . FADKWGVELVAATPFNHQVDVKGLLDGKLADIKQLPPTLLLQYYPMGGTNSAFQPYGGLGVNYTT
Template Known Secondary structure 

..SSSSS







TTTTS

S
Template Predicted Secondary structure 


..
















Template SS confidence 















































































   43......50..... ....60.........70.........80.........90.........100.........110.........120
 
   224.....230.........240.........250.........260.........270 .........280..
Predicted Secondary structure  ...........




















..........







Query SS confidence  . . . . . . . . . . .














































. . . . . . . . . .











Query Sequence  . . . . . . . . . . . SPDIEDYQERPANGWDIRAEGYLPAWPQLGASLMYEQYYGDEVGLFG. . . . . . . . . . KDKRQKDPHAIS
Query Conservation  ...........
    

 



 
 

     

  






 



 

 
 


..........    
 

 
 
Alig confidence  ...........














































..........











Template Conservation                          
   
 
  
 


   
  

 
                                
Template Sequence  FFDEDLASNRKAQGFSSMKLQDSWGLAGELGFDYMLNEHALFNMAVWYMDIDTKASINGPSALGVNKTKVDVDVDPWVYM
Template Known Secondary structure 
TT


SSSS



TTTT
S

Template Predicted Secondary structure 
































Template SS confidence 















































































   124.....130.........140.........150.........160.........170.........180.........190.........200...
 
   283.....
Predicted Secondary structure 

Query SS confidence 





Query Sequence  AEVTYT
Query Conservation   

 

Alig confidence 





Template Conservation 

  

Template Sequence  IGFGYK
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 





   204.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions