Job Description P0CF63 Confidence 99.67% Date Wed Jan 25 15:20:36 GMT 2012 Rank 11 Aligned Residues 172 % Identity 13% Template c1bcoA_ PDB info PDB header:transposase Chain: A: PDB Molecule:bacteriophage mu transposase; PDBTitle: bacteriophage mu transposase core domain Resolution 2.40 Å

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		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.							.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.													.	.
Predicted Secondary structure																	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	K	E	S	N	Q	R	W	C	S	D	G	F	E	.	.	.	.	.	.	F	C	C	D	N	G	E	R	L	R	V	T	F	A	L	D	C	C	D	R	E	A	L	H	W	A	V	T	T	G	G	F	N	S	E	T	V	Q	D	V	M	L	G	A	V	.	.	.	.	.	.	.	.	.	.	.	.	E	R
Query Conservation																	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	H	L	D	A	M	Q	W	I	N	G	D	G	Y	L	H	N	V	F	V	R	W	F	N	G	D	V	I	R	P	K	T	W	F	W	Q	D	V	K	T	R	K	I	L	G	W	R	C	D	V	S	E	N	I	D	S	I	R	L	S	F	M	D	V	V	T	R	Y	G	I	P	E	D	F	H	I	T	I	D	N
Template Known Secondary structure						T	T	T										S	B					T	T	S													T	T	T										S	S																					S	S
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.				.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																																																				.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	F	G	N	D	L	P	S	S	P	V	E	W	L	T	D	N	G	S	C	Y	R	A	N	E	T	R	Q	F	A	R	M	L	G	L	E	P	K	N	T	A	V	R	S	P	E	S	N	G	I	.	.	.	A	E	S	F	V	K	T	I	K	R	D	Y	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																				.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	R	G	A	A	N	K	W	L	T	G	G	A	P	N	R	Y	R	F	K	V	K	E	D	D	P	K	G	L	F	L	L	M	G	A	K	M	H	W	T	S	V	V	A	G	K	G	W	G	Q	A	K	P	V	E	R	A	F	G	V	G	G	L	E	E	Y	V	D	K	H	P	A	L	A	G	A	Y	T	G	P
Template Known Secondary structure		T	T	S	T	T	T	T	T	T	S				T	T	T	T	B	S		B													T						S	S	S		T	T						S	S		S	S	G	G	G	S	G	G	G	G	G	G	T	T	T	T		G	G	G	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.					.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.
Query SS confidence																											.	.	.	.
Query Sequence		S	I	M	P	K	P	D	G	L	T	A	A	K	N	L	A	E	A	F	E	H	Y	N	E	W	.	.	.	.	H	P	H	S	A	L	G	Y	R	S	P	R	E	Y	L	R	Q	R	A	C	N	G	L
Query Conservation																											.	.	.	.
Alig confidence																											.	.	.	.								.
Template Conservation																																						.
Template Sequence		Y	G	D	R	A	V	D	A	E	L	F	L	K	T	L	A	E	G	V	A	M	F	N	A	R	T	G	R	E	T	E	M	C	G	G	K	.	L	S	F	D	D	V	F	E	R	E	Y	A	R	T	I
Template Known Secondary structure			T	T	T																										S	T	T	T	T	T	T	.												T	T	S
Template Predicted Secondary structure																																						.
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.		.	.	.	.	.	.	.	.	470	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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