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Job DescriptionP0AES4
Confidence100.00%DateThu Jan 5 11:24:06 GMT 2012
Rank5Aligned Residues477
% Identity98%Templated1ab4a_
SCOP infoType II DNA topoisomerase Type II DNA topoisomerase Type II DNA topoisomerase
Resolution2.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  VGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNF
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Template Sequence  VGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNF
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Query Sequence  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTE
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Template Sequence  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTE
Template Known Secondary structure 

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Query Sequence  VINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVN
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Template Sequence  VINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVE. . . . . . VETIIVHEIPYQVN
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Query Sequence  KARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKD
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Template Sequence  KARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE. . . . . . GEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKD
Template Known Secondary structure  TTT
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Query Sequence  IIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGD
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Template Sequence  IIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPW. . . . QLGNVAAMLE
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GGGTT

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Query Sequence  DAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELV
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Template Sequence  DAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELV
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Query Sequence  REQFGDKRRTEIT
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Template Sequence  REQFGDKRRTEIT
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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