Job Description P0AES4 Confidence 100.00% Date Thu Jan 5 11:24:06 GMT 2012 Rank 18 Aligned Residues 272 % Identity 24% Template c3no0B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit a; PDBTitle: aquifex aeolicus type iia topoisomerase c-terminal domain Resolution 1.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	V	T	L	S	H	Q	G	Y	V	K	Y	Q	P	L	S	E	Y	E	A	Q	R	R	G	G	K	G	K	S	A	A	R	I	K	E	E	D	F	I	D	R	L	L	V	A	N	T	H	D	H	I	L	C	F	S	S	R	G	R	V	Y	S	M	K	V	Y	Q	L	P	E	A	T	R	G	A	R	G	R	P
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.
Template Sequence		I	T	V	A	V	L	Q	D	G	S	I	I	P	V	E	E	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	K	A	P	V	V	N	I	L	R	V	P	F	T	E	G	L	F	L	V	S	N	R	G	R	V	Y	W	I	A	G	S	Q	A	L	Q	G	S	K	V	S	L	K	.	.
Template Known Secondary structure								T	T	S					G	G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G			S										T	T	S							T	T	S							S					T	S						S	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.
Template SS confidence
		496	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.																	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
		619	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	N	L	L	P	L	E	Q	D	E	R	I	T	A	I	L	P	V	T	E	F	E	E	G	V	K	V	F	M	A	T	A	N	G	T	V	K	K	T	V	L	T	E	F	N	R	L	R	T	A	G	K	V	A	I	K	L	V	D	G	D	E	L	I	G	V	D	L	T	S	G	E	D	E	V	M	L	F	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.																.	.																						.
Template Conservation		.	.	.	.	.	.	.																.	.																						.
Template Sequence		.	.	.	.	.	.	.	S	R	E	E	K	I	V	G	A	F	I	R	E	K	F	.	.	G	N	R	L	L	L	A	T	K	K	G	Y	V	K	K	I	P	L	A	E	F	.	E	Y	K	A	Q	G	M	P	I	I	K	L	T	E	G	D	E	V	V	S	I	A	S	S	V	D	E	T	H	I	L	L	F	T
Template Known Secondary structure		.	.	.	.	.	.	.	S	T	T									T	T	T	S	.	.		S							T	T	S							G	G	G	T	.	T	T		S	T	T				S	B			T	T											T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.																.	.																						.
Template SS confidence
									558	.	560	.	.	.	.	.	.	.	.	.	570	.	.			.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.		.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.
		699	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	G	K	V	V	R	F	K	E	S	S	V	R	A	M	G	C	N	T	T	G	V	R	G	I	R	L	G	E	G	D	K	V	V	S	L	I	V	P	R	G	D	G	A	I	L	T	A	T	Q	N	G	Y	G	K	R	T	A	V	A	E	Y	P	T	K	S	R	A	T	K	G	V	I	S	I	K	V	T	E
Query Conservation
Alig confidence																																																																													.	.	.
Template Conservation																																																																													.	.	.
Template Sequence		K	K	G	R	V	A	R	F	S	V	R	E	V	P	P	S	T	P	G	A	R	G	V	Q	G	I	K	L	E	K	N	D	E	T	S	G	L	R	I	W	N	G	E	P	Y	L	L	V	I	T	A	K	G	R	V	K	K	I	S	H	E	E	I	P	K	T	N	R	G	V	K	G	T	E	V	.	.	.	S	G
Template Known Secondary structure		T	T	S							G	G	G	S		B			T	T	S	B					B				T	T											S		S							T	T	S							G	G	G	S					T	T	B						.	.	.
Template Predicted Secondary structure																																																																													.	.	.
Template SS confidence
		628	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.				.	.
		779	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.			.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		R	N	G	L	V	V	G	A	V	Q	V	D	D	C	D	Q	I	M	M	I	T	D	A	G	T	L	V	.	.	R	T	R	V	S	E	I	S	I	V	G	R	N	T	Q	G	V	I	L	I	R	T	A	E	D	E	N	V	V	G	L	Q	R	V	A	E
Query Conservation																													.	.
Alig confidence																													.	.
Template Conservation
Template Sequence		T	K	D	T	L	V	D	L	I	P	I	K	E	E	V	E	L	L	I	T	T	K	N	G	K	A	F	Y	D	K	I	N	Q	K	D	I	P	L	S	T	K	K	S	I	P	R	T	R	W	K	L	E	D	D	E	I	I	K	V	V	I	K	K	S	E
Template Known Secondary structure		S	S	S									S	S									T	T	S									G	G	G	S		B			T	T	S					S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		705	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions