Job Description P0AES4 Confidence 58.17% Date Thu Jan 5 11:24:06 GMT 2012 Rank 26 Aligned Residues 244 % Identity 13% Template c3jroA_ PDB info PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice Resolution 4.00 Å

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		535	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.						.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.		.	.	.	.	.	.	600	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.																																							.
Query SS confidence																							.	.	.	.	.																																							.
Query Sequence		T	Q	E	D	V	V	V	T	L	S	H	Q	G	Y	V	K	Y	Q	P	L	S	.	.	.	.	.	E	Y	E	A	Q	R	R	G	G	K	G	K	S	A	A	R	I	K	E	E	D	F	I	D	R	L	L	V	A	N	T	H	D	H	I	L	C	F	.	S	S	R	G	R	V	Y	S	M	K	V	Y	Q	L	P
Query Conservation																							.	.	.	.	.																																							.
Alig confidence																							.	.	.	.	.																																							.
Template Conservation
Template Sequence		Y	Y	G	K	R	L	A	T	C	S	S	D	K	T	I	K	I	F	E	V	E	G	E	T	H	K	L	I	D	T	L	T	G	H	E	G	P	V	W	R	V	D	W	A	H	P	K	F	G	T	I	L	A	S	C	S	Y	D	G	K	V	L	I	W	K	E	E	N	G	R	W	S	Q	I	A	V	H	A	V	H
Template Known Secondary structure		S	S	S								T	T	T									T	T												S	S										T	T	S		S							T	T	S									T	T
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		609	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	T	R	G	A	R	G	R	P	I	V	N	L	L	P	L	E	Q	D	E	R	I	T	A	I	L	P	V	T	E	F	E	E	G	V	K	V	F	M	A	T	A	N	G	T	V	K	K	T	V	L	T	E	F	N	R	L	R	T	A	G	K	V	A	I	K	L	V	D	G	D	E	L	I	G	V	D	L	T
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	N	S	V	Q	W	A	P	H	E	Y	G	P	L	L	L	V	A	S	S	D	G	K	V	S	V	V	E	F	K	E	N	G	T	T	S	P	I	I	I	D	A	H	A	I	G	V	N	S	A	S	W	A	P	A	T	T
Template Known Secondary structure		S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										G	G	G		S							T	T	S									S	S	S											S	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		99	100																					.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		689	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740				.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.
Query SS confidence																																																						.	.	.
Query Sequence		S	G	E	D	E	V	M	L	F	S	A	E	G	K	V	V	R	F	K	E	S	S	V	R	A	M	G	C	N	T	T	G	V	R	G	I	R	L	G	E	G	D	K	V	V	S	L	I	V	P	R	G	.	.	.	D	G	A	I	L	T	A	T	Q	N	G	Y	G	K	R	T	A	V	A	E	Y	P	T	K	S
Query Conservation																																																						.	.	.
Alig confidence																																					.	.	.	.														.	.	.																.	.	.	.	.
Template Conservation																																					.	.	.	.																																.	.	.	.	.
Template Sequence		K	E	S	R	K	F	V	T	G	G	A	D	N	L	V	K	I	W	K	Y	N	S	D	A	Q	T	Y	V	L	E	S	T	L	E	G	.	.	.	.	H	S	D	W	V	R	D	V	A	W	S	P	T	V	L	L	R	S	Y	L	A	S	V	S	Q	D	R	T	C	I	I	.	.	.	.	.	W	T	Q	D	N
Template Known Secondary structure		G	G	G								T	T	S									T	T	T	T											.	.	.	.		S	S												S	S	S								S	S	S					.	.	.	.	.				S	S
Template Predicted Secondary structure																																					.	.	.	.																																.	.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.						.	.	.	.	.
		766	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	T	K	G	V	I	S	I	K	V	T	E	R	N	G	L	V	V	G	A	V	Q	V	D	D	C	D	Q	I	M	M	I	T	D	A	G	T	L	V	R	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Q	G	P	W	K	K	T	L	L	K	E	E	K	F	P	D	V	L	W	R	A	S	W	S	L	S	G	N	V	L	A	L	S	G	G	D	N	K	V	T	L
Template Known Secondary structure		S	S	S			B			B	S	S	S	S			S	S									T	T	T								S	S	S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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