Job Description P0AES4 Confidence 100.00% Date Thu Jan 5 11:24:06 GMT 2012 Rank 4 Aligned Residues 482 % Identity 52% Template c3ifzA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of the first part of the mycobacterium tuberculosis2 dna gyrase reaction core: the breakage and reunion domain at 2.7 a3 resolution Resolution 2.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	L	A	R	E	I	T	P	V	N	I	E	E	E	L	K	S	S	Y	L	D	Y	A	M	S	V	I	V	G	R	A	L	P	D	V	R	D	G	L	K	P	V	H	R	R	V	L	Y	A	M	N	V	L	G	N	D	W	N	K	A	Y	K	K	S	A	R	V	V	G	D	V	I	G	K	Y	H	P	H	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	D	S	L	D	R	I	E	P	V	D	I	E	Q	E	M	Q	R	S	Y	I	D	Y	A	M	S	V	I	V	G	R	A	L	P	E	V	R	D	G	L	K	P	V	H	R	R	V	L	Y	A	M	F	D	S	G	F	R	P	D	R	S	H	A	K	S	A	R	S	V	A	E	T	M	G	N	Y	H	P	H	G
Template Known Secondary structure																																		S		B	T	T	T																	T			T	T	S																T		T	T
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	A	V	Y	D	T	I	V	R	M	A	Q	P	F	S	L	R	Y	M	L	V	D	G	Q	G	N	F	G	S	I	D	G	D	S	A	A	A	M	R	Y	T	E	I	R	L	A	K	I	A	H	E	L	M	A	D	L	E	K	E	T	V	D	F	V	D	N	Y	D	G	T	E	K	I	P	D	V	M	P	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	S	I	Y	D	S	L	V	R	M	A	Q	P	W	S	L	R	Y	P	L	V	D	G	Q	G	N	F	G	S	P	G	N	D	P	P	A	A	M	R	Y	T	E	A	R	L	T	P	L	A	M	E	M	L	R	E	I	D	E	E	T	V	D	F	I	P	N	Y	D	G	R	V	Q	E	P	T	V	L	P	S
Template Known Secondary structure		S										T	T		T	T	T		S	S		S					S					S	S	S						T	T	T													S	T	T	T	T	T	T		S						T	T	S	S	S				S	S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.					.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.
Query SS confidence																																																.	.	.	.
Query Sequence		K	I	P	N	L	L	V	N	G	S	S	G	I	A	V	G	M	A	T	N	I	P	P	H	N	L	T	E	V	I	N	G	C	L	A	Y	I	D	D	E	D	I	S	I	E	G	.	.	.	.	L	M	E	H	I	P	G	P	D	F	P	T	A	A	I	I	N	G	R	R	G	I	E	E	A	Y	R	T	G	R
Query Conservation																																																.	.	.	.
Alig confidence																																																.	.	.	.
Template Conservation
Template Sequence		R	F	P	N	L	L	A	N	G	S	G	G	I	A	V	G	M	A	T	N	I	P	P	H	N	L	R	E	L	A	D	A	V	F	W	A	L	E	N	H	D	A	D	E	E	E	T	L	A	A	V	M	G	R	V	K	G	P	D	F	P	T	A	G	L	I	V	G	S	Q	G	T	A	D	A	Y	K	T	G	R
Template Known Secondary structure		S	S												S	S	S								B																T	T																S	B			T	T							S										S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		G	K	V	Y	I	R	A	R	A	E	V	E	V	D	A	K	T	G	R	E	T	I	I	V	H	E	I	P	Y	Q	V	N	K	A	R	L	I	E	K	I	A	E	L	V	K	E	K	R	V	E	G	I	S	A	L	R	D	E	.	S	D	K	D	G	M	R	I	V	I	E	V	K	R	D	A	V	G	E	V	V
Query Conservation																																																												.
Alig confidence													.	.	.	.	.																																											.
Template Conservation													.	.	.	.	.
Template Sequence		G	S	I	R	M	R	G	V	V	E	V	.	.	.	.	.	E	E	D	S	R	L	V	I	T	E	L	P	Y	Q	V	N	H	D	N	F	I	T	S	I	A	E	Q	V	R	D	G	K	L	A	G	I	S	N	I	E	D	Q	S	S	D	R	V	G	L	R	I	V	I	E	I	K	R	D	A	V	A	K	V	V
Template Known Secondary structure													.	.	.	.	.													T	T															T	T	T	T	T		S									B	T	T	T	B									S	S			S	T
Template Predicted Secondary structure													.	.	.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.						260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	N	L	Y	S	Q	T	Q	L	Q	V	S	F	G	I	N	M	V	A	L	H	H	G	Q	P	K	I	M	N	L	K	D	I	I	A	A	F	V	R	H	R	R	E	V	V	T	R	R	T	I	F	E	L	R	K	A	R	D	R	A	H	I	L	E	A	L	A	V	A	L	A	N	I	D	P	I	I	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	N	N	L	Y	K	H	T	Q	L	Q	T	S	F	G	A	N	M	L	A	I	V	D	G	V	P	R	T	L	R	L	D	Q	L	I	R	Y	Y	V	D	H	Q	L	D	V	I	V	R	R	T	T	Y	R	L	R	K	A	N	E	R	A	H	I	L	R	G	L	V	K	A	L	D	A	L	D	E	V	I	A	L
Template Known Secondary structure									S	T	T													T	T																																																	T
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	H	A	P	T	P	A	E	A	K	T	A	L	V	A	N	P	W	Q	L	G	N	V	A	A	M	L	E	R	A	G	D	D	A	A	R	P	E	W	L	E	P	E	F	G	V	R	D	G	L	Y	Y	L	T	E	Q	Q	A	Q	A	I	L	D	L	R	L	Q	K	L	T	G	L	E	H	E	K	L	L	D
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	R	A	S	E	T	V	D	I	A	R	A	G	L	I	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	I	D	E	I	Q	A	Q	A	I	L	D	M	Q	L	R	R	L	A	A	L	E	R	Q	R	I	I	D
Template Known Secondary structure						S	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T														G	G	G	G	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.																																			.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	K	E	L	L	D	Q	I	A	E	L	L	R	I	L	G	S	A	D	R	L	M	E	V	I	R	E	E	L	E	L	V	R	E	Q	F	G	D	K	R	R	T	E	I	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	A	K	I	E	A	E	I	A	D	L	E	D	I	L	A	K	P	E	R	Q	R	G	I	V	R	D	E	L	A	E	I	V	D	R	H	G	D	D	R	R	T	R	I	I
Template Known Secondary structure																																												S
Template Predicted Secondary structure
Template SS confidence
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.