Job Description P0AES4 Confidence 100.00% Date Thu Jan 5 11:24:06 GMT 2012 Rank 3 Aligned Residues 479 % Identity 60% Template c2xcsD_ PDB info PDB header:isomerase Chain: D: PDB Molecule:dna gyrase subunit b, dna gyrase subunit a; PDBTitle: the 2.1a crystal structure of s. aureus gyrase complex with gsk2994232 and dna Resolution 2.10 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	V	N	I	E	E	E	L	K	S	S	Y	L	D	Y	A	M	S	V	I	V	G	R	A	L	P	D	V	R	D	G	L	K	P	V	H	R	R	V	L	Y	A	M	N	V	L	G	N	D	W	N	K	A	Y	K	K	S	A	R	V	V	G	D	V	I	G	K	Y	H	P	H	G	D	S	A	V	Y	D	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	E	R	N	I	T	S	E	M	R	E	S	F	L	D	Y	A	M	S	V	I	V	A	R	A	L	P	D	V	R	D	G	L	K	P	V	H	R	R	I	L	Y	G	L	N	E	Q	G	M	T	P	D	K	S	Y	K	K	S	A	R	I	V	G	D	V	M	G	K	Y	H	P	H	G	D	S	S	I	Y	E	A
Template Known Secondary structure																								T	T	S	S		B	T	T	T																T	T			T	T	S																T			S
Template Predicted Secondary structure
Template SS confidence
		1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	R	M	A	Q	P	F	S	L	R	Y	M	L	V	D	G	Q	G	N	F	G	S	I	D	G	D	S	A	A	A	M	R	Y	T	E	I	R	L	A	K	I	A	H	E	L	M	A	D	L	E	K	E	T	V	D	F	V	D	N	Y	D	G	T	E	K	I	P	D	V	M	P	T	K	I	P	N	L	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	V	R	M	A	Q	D	F	S	Y	R	Y	P	L	V	D	G	Q	G	N	F	G	S	M	D	G	D	G	A	A	A	M	R	F	T	E	A	R	M	T	K	I	T	L	E	L	L	R	D	I	N	K	D	T	I	D	F	I	D	N	Y	D	G	N	E	R	E	P	S	V	L	P	A	R	F	P	N	L	L	A
Template Known Secondary structure						T		T	T	T		S	S		S					S		B			T	T				B			T	T	T														T	T	T	T	T	T		S						T	T	S	S					S	S				S	S
Template Predicted Secondary structure
Template SS confidence
		1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	S	S	G	I	A	V	G	M	A	T	N	I	P	P	H	N	L	T	E	V	I	N	G	C	L	A	Y	I	D	D	E	D	I	S	I	E	G	L	M	E	H	I	P	G	P	D	F	P	T	A	A	I	I	N	G	R	R	G	I	E	E	A	Y	R	T	G	R	G	K	V	Y	I	R	A	R	A	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	G	A	S	G	I	A	V	G	M	A	T	N	I	P	P	H	N	L	T	E	L	I	N	G	V	L	S	L	S	K	N	P	D	I	S	I	A	E	L	M	E	D	I	E	G	P	D	F	P	T	A	G	L	I	L	G	K	S	G	I	R	R	A	Y	E	T	G	R	G	S	I	Q	M	R	S	R	A	V	I
Template Known Secondary structure									S	S																								T	T							T	T	T			S				T	T							S										S
Template Predicted Secondary structure
Template SS confidence
		1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		E	V	D	A	K	T	G	R	E	T	I	I	V	H	E	I	P	Y	Q	V	N	K	A	R	L	I	E	K	I	A	E	L	V	K	E	K	R	V	E	G	I	S	A	L	R	D	E	S	D	.	K	D	G	M	R	I	V	I	E	V	K	R	D	A	V	G	E	V	V	L	N	N	L	Y	S	Q	T	Q	L	Q
Query Conservation																																																			.
Alig confidence			.																																																.
Template Conservation			.
Template Sequence		E	.	E	R	G	G	G	R	Q	R	I	V	V	T	E	I	P	F	Q	V	N	K	A	R	M	I	E	K	I	A	E	L	V	R	D	K	K	I	D	G	I	T	D	L	R	D	E	T	S	L	R	T	G	V	R	V	V	I	D	V	R	K	D	A	N	A	S	V	I	L	N	N	L	Y	K	Q	T	P	L	Q
Template Known Secondary structure			.				T	T											T	T																T	T		S		S									B	T	T	T	B									T	T	S													S	T	T
Template Predicted Secondary structure			.
Template SS confidence
		1250		.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	F	G	I	N	M	V	A	L	H	H	G	Q	P	K	I	M	N	L	K	D	I	I	A	A	F	V	R	H	R	R	E	V	V	T	R	R	T	I	F	E	L	R	K	A	R	D	R	A	H	I	L	E	A	L	A	V	A	L	A	N	I	D	P	I	I	E	L	I	R	H	A	P	T	P	A	E	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	S	F	G	V	N	M	I	A	L	V	N	G	R	P	K	L	I	N	L	K	E	A	L	V	H	Y	L	E	H	Q	K	T	V	V	R	R	R	T	Q	Y	N	L	R	K	A	K	D	R	A	H	I	L	E	G	L	R	I	A	L	D	H	I	D	E	I	I	S	T	I	R	E	S	D	T	D	K	V	A	M
Template Known Secondary structure													T	T																																																	T										T		S	S
Template Predicted Secondary structure
Template SS confidence
		1329	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	L	V	A	N	P	W	Q	L	G	N	V	A	A	M	L	E	R	A	G	D	D	A	A	R	P	E	W	L	E	P	E	F	G	V	R	D	G	L	Y	Y	L	T	E	Q	Q	A	Q	A	I	L	D	L	R	L	Q	K	L	T	G	L	E	H	E	K	L	L	D	E	Y	K	E	L	L	D	Q	I	A	E
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	S	L	Q	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	K	L	S	E	K	Q	A	Q	A	I	L	D	M	R	L	R	R	L	T	G	L	E	R	D	K	I	E	A	E	Y	N	E	L	L	N	Y	I	S	E
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T														G	G	G	G	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1409	1410	.	.	.	.																																			.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	R	I	L	G	S	A	D	R	L	M	E	V	I	R	E	E	L	E	L	V	R	E	Q	F	G	D	K	R	R	T	E	I	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	T	I	L	A	D	E	E	V	L	L	Q	L	V	R	D	E	L	T	E	I	R	D	R	F	G	D	D	R	R	T	E	I	Q
Template Known Secondary structure																																	S
Template Predicted Secondary structure
Template SS confidence
		1455	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.