Job Description P0AES4 Confidence 100.00% Date Thu Jan 5 11:24:06 GMT 2012 Rank 9 Aligned Residues 442 % Identity 50% Template c2inrA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: crystal structure of a 59 kda fragment of topoisomerase iv subunit a2 (grla) from staphylococcus aureus Resolution 2.80 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	P	D	V	R	D	G	L	K	P	V	H	R	R	V	L	Y	A	M	N	V	L	G	N	D	W	N	K	A	Y	K	K	S	A	R	V	V	G	D	V	I	G	K	Y	H	P	H	G	D	S	A	V	Y	D	T	I	V	R	M	A	Q	P	F	S	L	R	Y	M	L	V	D	G	Q	G	N	F	G	S	I
Query Conservation
Alig confidence																																																		.	.	.
Template Conservation																																																		.	.	.
Template Sequence		A	L	P	D	V	R	D	G	L	K	P	V	Q	R	R	I	L	Y	A	M	Y	S	S	G	N	T	H	D	K	N	F	R	K	S	A	K	T	V	G	D	V	I	G	Q	Y	H	P	S	.	.	.	S	V	Y	E	A	M	V	R	L	S	Q	D	W	K	L	R	H	V	L	I	E	M	H	G	N	N	G	S	I
Template Known Secondary structure					B	T	T	T																	T			S	S	S																T				.	.	.									T	T		T	T	T		S	S		S					S					T
Template Predicted Secondary structure																																																		.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	D	S	A	A	A	M	R	Y	T	E	I	R	L	A	K	I	A	H	E	L	M	A	D	L	E	K	E	T	V	D	F	V	D	N	Y	D	G	T	E	K	I	P	D	V	M	P	T	K	I	P	N	L	L	V	N	G	S	S	G	I	A	V	G	M	A	T	N	I	P	P	H	N	L	T	E	V	I	N
Query Conservation
Alig confidence																																																																.	.
Template Conservation																																																																.	.
Template Sequence		D	N	D	P	P	A	A	M	R	Y	T	E	A	K	L	S	L	L	A	E	E	L	L	R	D	I	N	K	E	T	V	S	F	I	P	N	Y	D	D	T	T	L	E	P	M	V	L	P	S	R	F	P	N	L	L	V	N	G	S	T	G	I	.	.	G	Y	A	T	D	I	P	P	H	N	L	A	E	V	I	Q
Template Known Secondary structure		T							T	T	T							T	T					S	T	T	T	T	S	S		S						T	T	S	S	S				S	S				S	S												.	.									B
Template Predicted Secondary structure																																																																.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	C	L	A	Y	I	D	D	E	D	I	S	I	E	G	L	M	E	H	I	P	G	P	D	F	P	T	A	A	I	I	N	G	R	R	G	I	E	E	A	Y	R	T	G	R	G	K	V	Y	I	R	A	R	A	E	V	E	V	D	A	K	T	G	R	E	T	I	I	V	H	E	I	P	Y	Q	V	N	K	A	R
Query Conservation
Alig confidence																																																											.	.	.	.	.
Template Conservation																																																											.	.	.	.	.
Template Sequence		A	T	L	K	Y	I	D	N	P	D	I	T	V	N	Q	L	M	K	Y	I	K	G	P	D	F	P	T	G	G	I	I	Q	G	I	D	G	I	K	K	A	Y	E	S	G	K	G	R	I	I	V	R	S	K	V	E	E	E	.	.	.	.	.	T	R	K	Q	L	I	I	T	E	I	P	Y	E	V	N	K	S	S
Template Known Secondary structure										T	T							T	T	T			S	B			T	T																	S														.	.	.	.	.												T	T
Template Predicted Secondary structure																																																											.	.	.	.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.						.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	E	K	I	A	E	L	V	K	E	K	R	V	E	G	I	S	A	L	R	D	E	S	D	K	D	G	M	R	I	V	I	E	V	K	R	D	A	V	G	E	V	V	L	N	N	L	Y	S	Q	T	Q	L	Q	V	S	F	G	I	N	M	V	A	L	H	H	G	Q	P	K	I	M	N	L	K	D	I	I	A
Query Conservation
Alig confidence															.	.	.																						.	.	.	.	.	.
Template Conservation															.	.	.																						.	.	.	.	.	.
Template Sequence		L	V	K	R	I	D	E	L	R	A	D	K	K	.	.	.	V	D	E	V	R	D	E	T	D	R	T	G	L	R	I	A	I	E	L	E	S	.	.	.	.	.	.	I	K	N	Y	L	Y	K	N	S	D	L	Q	I	S	Y	N	F	N	M	V	A	I	S	D	G	R	P	K	L	M	G	I	R	Q	I	I	D
Template Known Secondary structure													T	S	.	.	.									B	T	T	B										.	.	.	.	.	.						T	T	S	S	T	T													T	T
Template Predicted Secondary structure															.	.	.																						.	.	.	.	.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.				.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.							.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	V	R	H	R	R	E	V	V	T	R	R	T	I	F	E	L	R	K	A	R	D	R	A	H	I	L	E	A	L	A	V	A	L	A	N	I	D	P	I	I	E	L	I	R	H	A	P	T	P	A	E	A	K	T	A	L	V	A	N	P	W	Q	L	G	N	V	A	A	M	L	E	R	A	G	D	D	A	A
Query Conservation
Alig confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	Y	L	N	H	Q	I	E	V	V	A	N	R	T	K	F	E	L	D	N	A	E	K	R	M	H	I	V	E	G	L	I	K	A	L	S	I	L	D	K	V	I	E	L	I	R	S	S	K	N	K	R	D	A	K	E	N	L	I	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																																						S													S										T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	E	W	L	E	P	E	F	G	V	R	D	G	L	Y	Y	L	T	E	Q	Q	A	Q	A	I	L	D	L	R	L	Q	K	L	T	G	L	E	H	E	K	L	L	D	E	Y	K	E	L	L	D	Q	I	A	E	L	L	R	I	L	G	S	A	D	R	L	M	E	V	I	R	E	E	L	E	L	V	R	E	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	F	T	E	E	Q	A	E	A	I	V	M	L	Q	L	Y	R	L	T	N	T	D	I	V	A	L	E	G	E	H	K	E	L	E	A	L	I	K	Q	L	R	H	I	L	D	N	H	D	A	L	L	N	V	I	K	E	E	L	N	E	I	K	K	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S											T			G	G	G	G	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	D	K	R	R	T	E	I	T	A	N	S	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	K	S	E	R	L	S	L	I	E	A	E	I	E	E
Template Known Secondary structure												S	S
Template Predicted Secondary structure
Template SS confidence
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.