Job Description P0AES4 Confidence 28.04% Date Thu Jan 5 11:24:06 GMT 2012 Rank 49 Aligned Residues 160 % Identity 12% Template c2b5nD_ PDB info PDB header:dna binding protein/protein binding Chain: D: PDB Molecule:damage-specific dna binding protein 1; PDBTitle: crystal structure of the ddb1 bpb domain Resolution 2.80 Å

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		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.			.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.					.	.	.	.	.	650		.	.	.	.	.
Predicted Secondary structure																								.	.																																									.	.	.	.							.
Query SS confidence																								.	.																																									.	.	.	.							.
Query Sequence		V	A	N	T	H	D	H	I	L	C	F	S	S	R	G	R	V	Y	S	M	K	V	.	.	Y	Q	L	P	E	A	T	R	G	A	R	G	R	P	I	V	N	L	L	P	L	E	Q	D	E	R	I	T	A	I	L	P	V	T	E	F	E	E	G	V	.	.	.	.	K	V	F	M	A	T	.	A	N	G	T	V
Query Conservation																								.	.																																									.	.	.	.							.
Alig confidence																								.	.																.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.							.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	S	C	N	S	S	Q	V	V	V	A	V	G	R	A	L	Y	Y	L	Q	I	H	P	Q	E	L	R	Q	I	S	H	T	E	M	E	H	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	A	C	L	D	I	T	P	L	G	D	S	N	G	L	S	P	L	C	A	I	G	L	W	T	D	I	S	A
Template Known Secondary structure							S	S							T	T									T	T											S	S			.	.	.	.	.	.	.	.	.	.	.	.	.									T	T			S			S							S	S	S		B
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.														.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
		656	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710					.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.			.	.
Predicted Secondary structure																																																									.	.	.	.																		.	.
Query SS confidence																																																									.	.	.	.																		.	.
Query Sequence		K	K	T	V	L	T	E	F	N	R	L	R	T	A	G	K	V	A	I	K	L	V	D	G	D	E	L	I	G	V	D	L	T	S	G	E	D	E	V	M	L	F	S	A	E	G	K	V	V	R	F	K	E	S	S	.	.	.	.	V	R	A	M	G	C	N	T	T	G	V	R	G	I	R	L	G	.	.	E	G
Query Conservation																																																									.	.	.	.																		.	.
Alig confidence																	.	.	.																																						.	.	.	.																		.	.
Template Conservation																	.	.	.
Template Sequence		R	I	L	K	L	P	S	F	E	L	L	H	K	E	M	.	.	.	L	G	G	E	I	I	P	R	S	I	L	M	T	T	F	E	S	S	H	Y	L	L	C	A	L	G	D	G	A	L	F	Y	F	G	L	N	I	E	T	G	L	L	S	D	R	K	K	V	T	L	G	T	Q	P	T	V	L	R	T	F	R	S
Template Known Secondary structure						T	T	T	T							B	.	.	.			S	S												T	T									T	T	S									T	T	T													S	S									S
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		567	.	.	570	.	.	.	.	.	.	.	.	.	580	.				.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.
		730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	V	V	S	L	I	V	P	R	G	D	G	A	I	L	T	A	T	Q	N	G	Y	G	K	R	T	A	V	A
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence		L	S	T	T	N	V	F	A	C	S	D	R	P	.	T	V	I	Y	S	S	N	H	K	L	V	F	S	N	V	N
Template Known Secondary structure		S	S	S							B	S	S		.						S	S	S	S						B	S
Template Predicted Secondary structure															.
Template SS confidence
		644	.	.	.	.	.	650	.	.	.	.	.	.		.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions