Job Description P07014 Confidence 99.95% Date Thu Jan 5 11:00:00 GMT 2012 Rank 11 Aligned Residues 174 % Identity 15% Template c2fugC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Resolution 3.30 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.						.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.
Predicted Secondary structure																																			.												.	.	.	.	.																			.									.	.	.
Query SS confidence																																			.												.	.	.	.	.																			.									.	.	.
Query Sequence		T	L	E	A	D	E	G	R	D	M	M	L	L	D	A	L	I	Q	L	K	E	K	D	P	S	L	S	F	R	R	S	C	R	.	E	G	V	C	G	S	D	G	L	N	M	.	.	.	.	.	N	G	K	N	G	L	A	C	I	T	P	I	S	A	L	N	Q	P	.	G	K	K	I	V	I	R	P	.	.	.
Query Conservation																																			.												.	.	.	.	.																			.									.	.	.
Alig confidence									.	.																									.												.	.	.	.	.																			.									.	.	.
Template Conservation									.	.
Template Sequence		I	V	E	V	P	P	G	.	.	T	S	V	M	D	A	V	F	H	A	G	Y	D	V	P	L	F	C	S	E	K	H	L	S	P	I	G	A	C	R	M	C	L	V	R	I	G	L	I	Q	W	Q	P	K	L	A	A	S	C	V	T	A	V	A	D	G	M	V	V	D	T	L	S	D	V	V	R	E	A	Q	A
Template Known Secondary structure							T	T	.	.		B									T							S			T	T	S				S		S	T	T	S									B		S	S				T	T	T		B			T	T					S
Template Predicted Secondary structure									.	.
Template SS confidence
		10	.	.	.	.	.	.			.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
								94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.									.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	L	P	G	L	P	V	I	R	D	L	V	V	D	M	G	Q	F	Y	A	Q	Y	E	K	I	K	P	Y	L	L	N	N	G	Q	N	P	P	A	R	E	H	L	Q	M	P	E	Q	R	E	K	.	.	.	.	.	.	.	.	L	D	G	L	Y	E	C	I	L	C	A	C	C	S	T	S	C
Query Conservation		.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.							.	.																																										.	.	.	.	.	.	.	.
Template Conservation														.	.
Template Sequence		G	M	V	E	F	T	L	L	N	H	P	L	.	.	D	C	P	T	C	D	K	G	G	A	C	E	L	Q	D	R	T	V	E	Y	G	L	Y	E	K	L	P	V	Y	T	R	F	E	F	T	R	R	H	V	D	K	H	H	P	L	S	P	F	V	I	L	D	R	E	R	C	I	H	C	K	R	C	V	R	Y	F
Template Known Secondary structure										T				.	.		T	T	T		T	T	G	G	G										T									S					S											S	S	S	S	S					S
Template Predicted Secondary structure														.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	F	W	W	N	P	D	K	F	I	G	P	A	G	L	L	A	A	Y	R	F	L	I	D	S	R	D	T	E	T	D	S	R	L	D	G	L	S	D	A	F	S	V	F	R	C	H	S	I	M	N	C	V	S	V	C	P	K	G
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	E	V	P	G	D	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	F	I	E	R	G	V	H	T	F	I	G	T	M	D	F	G	L	P	S	G	F	S	G	N	I	T	D	I	C	P	V	G
Template Known Secondary structure				T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				B	S		G	G	G		B				S	S	T	T			S	S			T							S	S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.																			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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