Job Description P52131 Confidence 99.36% Date Thu Jan 5 12:05:36 GMT 2012 Rank 118 Aligned Residues 172 % Identity 15% Template c3mmpC_ PDB info PDB header:transferase Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts; PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins Resolution 2.50 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	V	S	E	R	I	L	Q	Q	I	N	Q	L	T	H	Y	E	P	V	I	G	I	M	G	K	T	G	A	G	K	S	S	L	C	N	A	L	F	A	G	E	V	S	P	V	S	D	V	A	A	C	T	R	D	P	L	R	F	R	L	Q	I	G	E	H	F	M	T	I	V	D	L	P	G	V	G	E	S	G	V
Query Conservation
Alig confidence															.																											.	.	.	.													.	.	.																.	.	.	.	.	.
Template Conservation															.																											.	.	.	.													.	.	.																.	.	.	.	.	.
Template Sequence		D	F	A	A	E	V	A	A	M	S	K	Q	S	.	K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	.	.	.	.	L	A	K	T	Y	G	G	T	S	H	V	E	.	.	.	Y	D	T	P	T	R	H	Y	A	H	V	D	C	P	G	.	.	.	.	.	.
Template Known Secondary structure															.												T	T	S													.	.	.	.													.	.	.				S	S											.	.	.	.	.	.
Template Predicted Secondary structure															.																											.	.	.	.													.	.	.																.	.	.	.	.	.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.					.	310	.	.	.	.	.	.	.	.	.	320				.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	T	E	Y	A	A	L	Y	R	E	Q	L	P	R	L	D	L	I	L	W	L	I	K	A	D	D	R	A	L	A	T	D	E	H	F	Y	R	Q	V	I	G	E	A	Y	R	H	K	M	L	F	V	I	S	Q	S	D	K	A	E	P	T	S	G	G	N	I	L	S	T	E	Q	K	Q	N	I	S	R	K	I
Query Conservation
Alig confidence		.																																			.																								.	.	.	.	.	.	.	.
Template Conservation		.																																			.																								.	.	.	.	.	.	.	.
Template Sequence		.	H	A	D	Y	V	K	N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	P	M	P	Q	T	R	E	.	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N	K	C	D	M	V	.	.	.	.	.	.	.	.	D	D	E	E	L	L	E	L	V	E	M	E	V
Template Known Secondary structure		.											T	S				S								T	T	T				T	T				.								T	T		S									G	G	G		.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.																																			.																								.	.	.	.	.	.	.	.
Template SS confidence
			1084	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.		.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140									.	.	.	.	.	.	.	.	.	1150	.	.	.
		180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200									.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure										.	.	.														.	.	.	.	.	.	.	.
Query SS confidence										.	.	.														.	.	.	.	.	.	.	.
Query Sequence		C	L	L	H	E	L	F	Q	.	.	.	P	V	H	P	V	C	A	V	S	V	R	L	Q	.	.	.	.	.	.	.	.	W	G	L	R	V	M	A	E	R	M	I	K	C	L	P
Query Conservation										.	.	.														.	.	.	.	.	.	.	.
Alig confidence										.	.	.														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	E	L	L	S	Q	Y	D	F	P	G	D	D	T	P	I	V	R	G	S	A	L	K	A	L	E	G	D	A	E	W	E	A	K	I	L	E	L	A	G	F	L	D	S	Y	I	P
Template Known Secondary structure								T	T	S		G	G	G														T																			S
Template Predicted Secondary structure
Template SS confidence
		1154	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions