Job Description P52131 Confidence 98.80% Date Thu Jan 5 12:05:36 GMT 2012 Rank 252 Aligned Residues 151 % Identity 15% Template c3cpjB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:gtp-binding protein ypt31/ypt8; PDBTitle: crystal structure of ypt31 in complex with yeast rab-gdi Resolution 2.35 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	I	G	I	M	G	K	T	G	A	G	K	S	S	L	C	N	A	L	F	A	G	E	V	S	P	V	S	D	V	A	A	C	T	R	D	P	L	R	F	R	L	Q	I	G	E	H	F	M	T	I	V	D	L	P	G	V	G	E	S	G	V	R	D	T	E	Y	A	A	L	Y	R	E	Q	L	P	R	L	D
Query Conservation
Alig confidence																											.	.	.	.	.	.	.																																		.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.																																		.	.	.	.	.
Template Sequence		F	K	I	V	L	I	G	D	S	G	V	G	K	S	N	L	L	S	R	F	T	K	N	E	F	.	.	.	.	.	.	.	N	M	G	V	E	F	A	T	R	T	L	E	I	E	G	K	R	I	K	A	Q	I	W	D	T	A	G	Q	E	R	Y	R	A	.	.	.	.	.	I	T	S	A	Y	Y	R	G	A	V
Template Known Secondary structure								S		T	T	S	S														.	.	.	.	.	.	.					S									T	T											T	T	T	T	T	T	T		.	.	.	.	.			G	G	G	T	T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.																																		.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.								.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.						.	.	.	.	.	.	.	.	80	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	L	W	L	I	K	A	D	D	R	A	L	A	T	D	E	H	F	Y	R	Q	V	I	G	E	A	Y	R	H	K	M	L	F	V	I	S	Q	S	D	K	A	E	P	T	S	G	G	N	I	L	S	T	E	Q	K	Q	N	I	S	R	K	I	C	L	L	H	E	L	F	Q	P	V	H	P	V	C	A	V	S
Query Conservation
Alig confidence																														.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	L	I	V	Y	D	S	K	S	S	S	Y	E	N	C	N	H	W	L	S	E	L	R	E	N	A	D	.	V	A	V	G	L	I	G	N	K	S	D	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	H	L	R	A	V	P	T	E	E	S	K	T	F	A	Q	E	N	Q	L	L	F	T	E	T	S
Template Known Secondary structure																														.										G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G			S												T	T
Template Predicted Secondary structure																														.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.														.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	L	Q	W	G	L	R	V	M	A	E	R	M	I	K	C	L
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		A	L	S	E	.	N	V	D	K	A	F	E	E	L	I	N	T	I
Template Known Secondary structure						.
Template Predicted Secondary structure						.
Template SS confidence
		157	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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