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Job DescriptionP52131
Confidence99.36%DateThu Jan 5 12:05:36 GMT 2012
Rank120Aligned Residues159
% Identity16%Templatec3agqA_
PDB info PDB header:translation,transferaseChain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q PDBTitle: structure of viral polymerase form ii
Resolution3.22 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   34.....40.........50.........60.........70.........80.........90.........100.........110...
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Query Sequence  HYEPVIGIMGKTGAGKSSLCNALFAGEVSPVSDVAACTRDPLRFRLQIGEHFMTIVDLPGVGESGVRDTEYAALYREQLP
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Template Sequence  KPHVNVGTIGHVDHGKTTLTAAITTV. . . . LAKTYGGTSHVE. . . YDTPTRHYAHVDCPG. . . . . . . HADYVKNMITGAA
Template Known Secondary structure  S



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   294.....300.........310......... 320.........330. ........340...... ...350.........
 
   114.....120.........130.........140....... ..150.........160.........170.........180....... ..190
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Query Sequence  RLDLILWLIKADDRALATDEHFYRQVIGEAYRHK. MLFVISQSDKAEPTSGGNILSTEQKQNISRKICLLHELFQ. . PVH
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Template Sequence  QMDGAILVVAATDGPMPQTREHILLGRQVG. . VPYIIVFLNKCDMVD. . . . . . . DEELLELVEMEVRELLSQYDFPGDDT
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STTT
S
GGGTT..
S


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TTT
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   382.......390.........400.........410. ........420...... ...430.........440.........450..
 
   191........200 .........210.....
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Query Sequence  PVCAVSVRLQ. . . . . . . . WGLRVMAERMIKCLP
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Template Sequence  PIVRGSALKALEGDAEWEAKILELAGFLDSYIP
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   453......460.........470.........480.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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