Job Description P52131 Confidence 98.99% Date Thu Jan 5 12:05:36 GMT 2012 Rank 216 Aligned Residues 167 % Identity 11% Template c2hxsA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:ras-related protein rab-28; PDBTitle: crystal structure of rab28a gtpase in the inactive (gdp-3'p-2 bound) form Resolution 1.10 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	P	V	I	G	I	M	G	K	T	G	A	G	K	S	S	L	C	N	A	L	F	A	G	E	V	S	P	V	S	D	V	A	A	C	T	R	D	P	L	R	F	R	L	Q	I	G	E	H	F	M	T	I	V	D	L	P	G	V	G	E	S	G	V	R	D	T	E	Y	A	A	L	Y	R	E	Q	L	P	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Q	L	K	I	V	V	L	G	D	G	A	S	G	K	T	S	L	T	T	C	F	A	Q	E	T	F	G	K	Q	Y	K	Q	T	I	G	L	D	F	F	L	R	R	I	T	L	P	G	N	L	N	V	T	L	Q	I	W	D	I	G	G	Q	T	I	G	G	K	M	L	D	K	Y	I	Y	G	A	Q	G	V	L
Template Known Secondary structure												T	T	S	S										G	G	G	T	T						T	T	T	S	S									T	T	T											T	T			T	T		T	T						T	T		S
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	L	I	L	W	L	I	K	A	D	D	R	A	L	A	T	D	E	H	F	Y	R	Q	V	I	G	E	A	Y	R	H	K	M	L	F	V	I	S	Q	S	D	K	A	E	P	T	S	G	G	N	I	L	S	T	E	Q	K	Q	N	I	S	R	K	I	C	L	L	H	E	L	F	Q	P	V	H	P	V	C	A
Query Conservation
Alig confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	Y	D	I	T	N	Y	Q	S	F	E	N	L	E	D	W	Y	T	V	V	K	K	V	S	E	E	S	E	T	Q	P	L	V	A	L	V	G	N	K	I	D	L	E	H	M	R	T	I	K	P	E	K	H	L	R	F	C	Q	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	S	S	H	F
Template Known Secondary structure						T	T							T																T												G	G	G	G	G	G		S	S													.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.														.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	V	R	L	Q	W	G	L	R	V	M	A	E	R	M	I	K	C	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	A	K	T	G	D	S	V	F	L	C	F	Q	K	V	A	A	E	I
Template Known Secondary structure				T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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