Job Description P52131 Confidence 99.61% Date Thu Jan 5 12:05:36 GMT 2012 Rank 67 Aligned Residues 167 % Identity 23% Template c1jalA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ychf protein; PDBTitle: ychf protein (hi0393) Resolution 2.40 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60											.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.
Query Sequence		E	P	V	I	G	I	M	G	K	T	G	A	G	K	S	S	L	C	N	A	L	F	A	G	E	.	.	.	.	.	.	.	.	.	.	V	S	P	V	S	D	V	A	A	C	T	R	D	P	L	R	F	R	L	Q	I	G	E	H	F	M	T	I	V	D	L	P	G	V	G	E	S	G	V	R	D	T	E	Y	A
Query Conservation																											.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	F	K	C	G	I	V	G	L	P	N	V	G	K	S	T	L	F	N	A	L	T	K	A	G	P	F	C	T	I	E	P	N	T	G	V	V	P	M	P	D	P	R	L	D	A	L	A	E	I	V	K	P	E	R	I	L	P	T	T	M	E	F	V	D	I	A	G	L	V	A	G	A	S	K	G	E	G	L	G
Template Known Secondary structure											T	T	S	S											T										S	S																			S														S			T	T					G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	Y	R	E	Q	L	P	R	L	D	L	I	L	W	L	I	K	A	D	D	R	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	K	F	L	A	N	I	R	E	T	D	A	I	G	H	V	V	R	C	F	E	N	I	D	P	L	D	D	I	D	T	I	N	T	E	L	A	L	A	D	L	D	S	C	E	R	A	I	Q	R	L	Q	K	R	A	K	G	G	D	K	E	A	K	F	E	L	S	V	M	E	K	I	L	P	V	L	E	N	A	G
Template Known Secondary structure										T		S									S																																				T	T	T																				T	T
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
									130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																																																					.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																																																					.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	A	T	D	E	H	F	Y	R	Q	V	I	G	E	A	Y	R	H	K	M	L	F	V	I	S	Q	S	D	K	A	E	P	T	S	G	G	N	I	L	S	T	E	Q	K	Q	N	I	S	R	K	I	C	L	L	H	E	L	F	Q	P	V	H	P	V	C	A	V	S	V	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.																																																																					.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	I	R	S	V	G	L	D	K	E	E	L	Q	A	I	K	S	Y	N	F	L	T	L	K	P	T	M	Y	I	A	N	V	N	E	D	G	F	E	N	N	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Y	L	D	R	V	R	E	I	A	A	K	E	G	A	V	V	V	P	V	C	A	A	I	E	S	E
Template Known Secondary structure			G	G	G	S											G	G	G			S	T	T	S										T	T		S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.													T	T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.														.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
																			198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	Q	W	G	L	R	V	M	A	E	R	M	I	K	C	L	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	A	E	L	D	D	E	E	K	V	E	F	L	Q	D	L	G	I	E	E	P	G	L	N	R	V	I	R	A	G	Y	A	L	L	N
Template Known Secondary structure		G	G	G	S		S	S	T	T					T	T	S	S			S		T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions