|   |
17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | |
|
|
|
. | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  | . | . | . | . |  |
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
Query Sequence |   |
M | A | G | I | T | D | R | P | F | R | T | L | C | Y | E | M | G | A | G | L | T | V | S | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
M | M | S | S | N | P | Q | V | W | E | S | D | K | S | R | L | R | M | V | H | I | D | E | P | G | I | R | T | V | Q | I | . |
. |
. |
. |
A | G | S | D | P | K | E |
Query Conservation |   |
|   |
|   |
|
|   |   |
|
|   |   |   |   |   |   |
|   |   |
|   |   |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
| . | . | . | . |   |
|   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|
|
|   |   |
|
|   |
|   |
|   |
|
|   |
|   |
|
|
|
|
|
|   |   |   |   |   |
|
|   |   |
|
|   |   |
|
|   |   |
|
|   |   | . | . | . | . |
|   |   |
|
|   |
|
|   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|   |   |
|   |   |   |
Template Sequence |   |
M | L | T | A | Y | D | Y | S | T | A | R | I | F | D | E | A | G | I | P | V | L | L | V | G | D | S | A | A | N | V | V | Y | G | Y | D | T | T | V | P | I | S | I | D | E | L | I | P | . |
. |
. |
. |
L | V | R | G | V | V | R | G | A | P | H | A | L | V | V | A | D | L | P | F | G | S | Y | E | A | G | P | T | A |
Template Known Secondary structure |   |
 |  |  |
|
| S |  |  |  |  |  |  |  |  | T | T | T |
|
|  |  |  |  |
| T | T |  |  |  |  | T | T |
|
| S | S | S | S | S |
|
| G | G | G | T |  |  | . | . | . | . |  |  |  |  |  |  |  |  |
| T | T | S |  |  |  |  |  |
|
| T | T | S | S | T | T |
|  |  |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
38 | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | |
|
|
|
. | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . |
  |
  |   |
79 | 80 | . | . | . | . | . | . | . | |
. | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | |
|
. | . | . | 150 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  | . |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
| . | . |
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | A | D | A | A | R | I | N | V | . |
E | S | G | A | Q | I | I | D | I | N | M | G | C | P | A | K | K | V | N | R | K | L | A | G | S | A | L | L | Q | Y | P | D | V | V | K | S | I | L | T | E | V | V | N | A | V | D | V | P | V | T | L | K | I | R | T | G | W | A | P | . |
. |
E | H | R | N | C | E | E | I | A |
Query Conservation |   |
  |   |   |
|
|   |   |   |   | . |   |   |
|   |
|   |
|
|
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |   |   |   | . | . |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|   |
|   |   |   |
|
|
|
|   |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|
|
|   |
|
|
|
|
|
|
|
|   |   |
|   |   |   |
|   |   |
|
Template Sequence |   |
A | L | A | A | A | T | R | F | L | K | D | G | G | A | H | A | V | K | L | E | G | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
E | R | V | A | E | Q | I | A | C | L | T | A | A | G | I | P | V | M | A | H | I | G | F | T | P | G | D | A | A | E | Q | T | I | A | D | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |  |  |  | B | S | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | G | G |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
114 | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . |
  |
  |   |
156 | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | L | A | E | D | C | G | I | Q | A | L | T | I | H | G | R | T | R | A | C | L | F | N | G | E | A | E | Y | D | S | I | R | A | V | K | Q | K | V | S | I | P | V | I | A | N | G |
Query Conservation |   |
  |   |
|   |   |   |
|   |   |   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |
|
|
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|
|
|
|
|   |   |
|
|
|
|   | . | . | . | . | . | . | . | . | . | . |
|
|   |   |
|
|   |   |
|
|   |   |   |   |
|
|
|
|
|
|
|
Template Sequence |   |
I | A | V | A | E | A | G | A | F | A | V | V | M | E | M | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | P | A | E | L | A | T | Q | I | T | G | K | L | T | I | P | T | V | G | I | G |
Template Known Secondary structure |   |
 |  |  |  |  |  | T |
| S |  |  |  |  |  | S | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |
| S | S |
|  |  |  |  | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
186 | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . |
  |