Job Description P0ABT5 Confidence 100.00% Date Thu Jan 5 11:16:20 GMT 2012 Rank 21 Aligned Residues 262 % Identity 18% Template c3l5aA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh/flavin oxidoreductase/nadh oxidase; PDBTitle: crystal structure of a probable nadh-dependent flavin oxidoreductase2 from staphylococcus aureus Resolution 1.65 Å

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		1	.	.	.		.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20									.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure						.																	.	.	.	.	.	.	.	.												.																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.																	.	.	.	.	.	.	.	.												.																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	I	G	.	Q	Y	Q	L	R	N	R	L	I	A	A	P	M	A	G	I	.	.	.	.	.	.	.	.	T	D	R	P	F	R	T	L	C	Y	E	.	M	G	A	G	L	T	V	S	E	M	M	S	S	N	P	Q	V	W	E	S	D	K	S	R	L	R	M	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation						.																	.	.	.	.	.	.	.	.												.																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.																	.	.	.	.	.	.	.	.												.																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	H	L	P	N	G	I	K	I	S	N	R	F	V	L	S	P	X	T	V	N	A	S	T	K	E	G	Y	I	T	K	A	D	L	A	Y	A	A	R	R	S	N	S	A	G	X	Q	V	T	G	A	A	Y	I	E	P	Y	G	K	L	F	E	Y	G	F	N	I	D	H	D	A	C	I	P	G	L	T	N	X	A
Template Known Secondary structure					T	T	S				S	S	S											S		T	T														T	T	T	S		S									S	S	G	G	G			S	T	T					S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
			59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.																																									.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	V	H	I	D	E	P	G	I	R	T	V	Q	I	A	G	S	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	M	A	D	A	A	R	I	N	V	E	S	G	A	Q	I	I	D	I	N
Query Conservation		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	T	X	K	Q	H	G	S	L	A	I	I	Q	L	A	H	A	G	R	F	S	N	Q	A	I	L	N	F	G	K	V	Y	G	P	S	P	X	T	L	H	S	P	I	E	H	V	V	I	A	X	S	H	E	K	I	N	S	I	I	Q	Q	Y	R	D	A	T	L	R	A	I	K	A	G	F	D	G	V	E	I	S
Template Known Secondary structure						T	T	S											G	G	G									S					S	S						S	S	S	S																												T	T		S
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
											98	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.					.	.	140	.	.	.	.	.	.									.	.	.	150	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																.																										.	.	.	.										.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																.																										.	.	.	.										.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	M	G	C	P	A	K	K	V	N	R	K	L	A	G	S	.	A	L	L	Q	Y	P	D	V	V	K	S	I	L	T	E	V	V	N	A	V	D	V	P	V	T	.	.	.	.	L	K	I	R	T	G	W	A	P	.	.	.	.	.	.	.	.	E	H	R	N	C	E	E	I	A
Query Conservation		.	.	.	.	.	.	.	.	.																.																										.	.	.	.										.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																.																										.	.	.	.										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	A	Q	R	L	L	I	Q	T	F	F	S	T	F	S	N	R	R	T	D	H	Y	G	A	D	S	L	K	N	R	A	R	L	C	L	E	V	X	R	A	V	Q	E	V	I	D	K	E	A	P	D	N	F	I	L	G	F	R	A	T	P	E	E	T	R	G	S	D	L	G	Y	T	I	D	E	F	N	Q	L	I
Template Known Secondary structure				T	T	S								T	T	T					S	T	T	S	T	T																										T	T									S					T	T
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		156	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.									.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure					.														.	.	.	.	.	.	.	.
Query SS confidence					.														.	.	.	.	.	.	.	.
Query Sequence		Q	L	A	.	E	D	C	G	I	Q	A	L	T	I	H	G	R	.	.	.	.	.	.	.	.	T	R	A	C	L	F	N	G	E	A	E	Y	D	S	I	R	A	V	K	Q	K	V	S	I	P	V	I	A	N	G	D	I	T	D	P	L	K	A	R	A	V	L	D	Y	T	G	A	D	A	L	M	I	G	R	A
Query Conservation					.														.	.	.	.	.	.	.	.
Alig confidence					.														.	.	.	.	.	.	.	.																																													.	.
Template Conservation																																																																							.	.
Template Sequence		D	W	V	X	D	V	S	N	I	Q	Y	L	A	I	A	S	W	G	R	H	I	Y	Q	N	T	S	R	T	P	G	D	H	F	G	R	P	V	N	Q	I	V	Y	E	H	L	A	G	R	I	P	L	I	A	S	G	G	I	N	S	P	E	S	A	L	D	A	L	Q	H	.	.	A	D	X	V	G	X	S	S	P
Template Known Secondary structure								S										T	T			G	G	G		B				S	S	T	T	T	T	S	B										T	T	S	S						S	S			S								G	G	G	.	.		S					S	T
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.			320	.	.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.												.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	G	R	P	W	I	F	R	E	I	Q	H	Y	L	D	.	.	.	.	.	.	.	.	.	.	.	T	G	E	L	L	P	P	L	P	L	A	E	V	K	R	L	L	C	A	H	V	R
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	V	T	E	P	D	F	V	H	K	L	A	E	Q	R	P	H	D	I	N	L	E	F	S	X	A	D	L	E	D	L	A	I	P	H	A	A	F	K	D	I	V	K	X	X	D	Y	G	E
Template Known Secondary structure						T	T							T	T		G	G	G							G	G	G	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions