Job Description P0ABT5 Confidence 98.00% Date Thu Jan 5 11:16:20 GMT 2012 Rank 234 Aligned Residues 193 % Identity 19% Template c3fa4D_ PDB info PDB header:lyase Chain: D: PDB Molecule:2,3-dimethylmalate lyase; PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form Resolution 2.18 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.																40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Query Sequence		R	N	R	L	I	A	A	P	M	A	G	I	T	D	R	P	F	R	T	L	C	Y	E	M	G	A	G	L	T	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	M	M	S	S	N	P	Q	V	W	E	S	D	K	S	R	L	R	M	V	H	I	D	E	P	G	I	R	T	V	Q	I	.	.
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Alig confidence										.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.																			.	.
Template Conservation										.	.																																															.	.	.	.
Template Sequence		P	D	S	F	I	V	A	P	.	.	G	V	Y	D	G	L	S	A	R	V	A	L	S	A	G	F	D	A	L	Y	M	T	G	A	G	T	A	A	S	V	H	G	Q	A	D	L	G	I	C	T	L	N	D	M	R	A	.	.	.	.	N	A	E	M	I	S	N	I	S	P	S	T	P	V	I	A	D	A	D	T
Template Known Secondary structure		T	T							.	.				S									T	T	T		S														T	S	S		S	S	S										.	.	.	.									S	T	T	S							T	T
Template Predicted Secondary structure										.	.																																															.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70					.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
			72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.			.	.	.
Predicted Secondary structure		.																																																														.	.	.											.	.
Query SS confidence		.																																																														.	.	.											.	.
Query Sequence		.	A	G	S	D	P	K	E	M	A	D	A	A	R	I	N	V	E	S	G	A	Q	I	I	D	I	N	M	G	C	P	A	K	K	V	N	R	K	L	A	G	S	A	L	L	Q	Y	P	D	V	V	K	S	I	L	T	E	V	V	N	A	V	.	.	.	D	V	P	V	T	L	K	I	R	T	.	.	G	W	A
Query Conservation		.																																																														.	.	.											.	.
Alig confidence		.			.																								.	.	.	.	.	.	.	.	.	.																										.	.	.											.	.
Template Conservation					.																								.	.	.	.	.	.	.	.	.	.
Template Sequence		G	Y	G	.	G	P	I	M	V	A	R	T	T	E	Q	Y	S	R	S	G	V	A	A	F	H	I	E	.	.	.	.	.	.	.	.	.	.	D	Q	V	Q	T	K	I	L	V	D	T	D	T	Y	V	T	R	I	R	A	A	V	Q	A	R	Q	R	I	G	S	D	I	V	V	I	A	R	T	D	S	L	Q	T
Template Known Secondary structure			S	S	.	S														T	T								.	.	.	.	.	.	.	.	.	.		B						B																					T
Template Predicted Secondary structure					.																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.											.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																																																			.							.	.	.
Query SS confidence																																																			.							.	.	.
Query Sequence		P	E	H	R	N	C	E	E	I	A	Q	L	A	E	D	C	G	I	Q	A	L	T	I	H	G	R	T	R	A	C	L	F	N	G	E	A	E	Y	D	S	I	R	A	V	K	Q	K	V	S	.	I	P	V	I	A	N	.	.	.	G	D	I	T	D	P	L	K	A	R	A	V	L	D	Y	T	G	A	D	A	L
Query Conservation																																																			.							.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.														.							.	.	.																.
Template Conservation																													.	.	.	.	.	.	.	.	.																																							.
Template Sequence		H	G	Y	E	E	S	V	A	R	L	R	A	A	R	D	A	G	A	D	V	G	F	L	E	G	I	T	.	.	.	.	.	.	.	.	.	S	R	E	M	A	R	Q	V	I	Q	D	L	A	G	W	P	L	L	L	N	M	V	E	H	G	A	T	P	S	I	S	A	A	E	A	K	E	M	.	G	F	R	I	I
Template Known Secondary structure																		T		S					T	T			.	.	.	.	.	.	.	.	.												T	T	T	S		B						T	T	S	S	S												.	T		S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.																																							.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.										.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.
		222	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	G	R	A	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	F	P	F	A	A	L
Template Known Secondary structure				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions