Job Description P0ABT5 Confidence 93.01% Date Thu Jan 5 11:16:20 GMT 2012 Rank 444 Aligned Residues 189 % Identity 15% Template c3dz1A_ PDB info PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 1.87a resolution Resolution 1.87 Å

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	K	E	M	A	D	A	A	R	I	N	V	E	S	G	A	Q	I	I	D	I	N	M	G	C	P	A	K	K	V	N	R	K	L	A	G	S	A	L	L	Q	Y	P	D	V	V	K	S	I	L	T	E	V	V	N	A	V	D	V	P	V	T	L	K	I	R	T	G	W	A	P	E	H	R	N	C	E	E	I
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.																								.							.
Template Conservation																												.	.	.	.	.	.	.	.	.	.																								.							.
Template Sequence		D	D	V	S	I	D	R	L	T	D	F	Y	A	E	V	G	C	E	G	V	T	V	L	G	I	L	.	.	.	.	.	.	.	.	.	.	G	E	A	P	K	L	D	A	A	E	A	E	A	V	A	T	R	F	I	K	R	A	K	.	S	X	Q	V	I	V	.	G	V	S	A	P	G	F	A	A	X	R	R	L
Template Known Secondary structure																T	T		S					S	T	G	G	.	.	.	.	.	.	.	.	.	.	G	T	G	G	G	S																	T	.	T	S					.					S	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.																								.							.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50											.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200							.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																																									.	.								.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.								.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	L	A	E	D	C	G	I	Q	A	L	T	I	H	G	R	T	R	A	C	L	F	N	G	E	A	E	Y	D	S	I	R	A	V	K	Q	K	V	.	.	S	I	P	V	I	A	N	.	.	.	.	.	.	G	D	I	T	D	P	L	K	A	R	A	V	L	D	Y	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																									.	.								.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.																	.	.								.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.
Template Sequence		A	R	L	S	X	D	A	G	A	A	G	V	X	I	A	P	P	P	S	L	R	.	.	T	D	E	Q	I	T	T	Y	F	R	Q	A	T	E	A	I	G	D	D	V	P	W	V	L	Q	D	Y	P	L	T	L	S	V	V	X	T	P	K	V	I	R	Q	I	V	X	D	S	A	S	C	V	X	L	K	H	E	D
Template Known Secondary structure									T		S								T	T			.	.	S																	T	T	S																												S	S
Template Predicted Secondary structure																							.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
																																								216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	A	D	A	L	M	I	G	R	A	A	Q	G	R	P	W	I	F	R	E	I	Q	H	Y	L	D	T	G	E	L	L	P	P	L	P	L	A	E	V	K	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.																		.	.	.	.	.	.
Template Conservation																																																	.	.	.																		.	.	.	.	.	.
Template Sequence		W	P	G	L	E	K	I	T	T	L	R	G	F	Q	K	D	G	S	L	R	P	L	S	I	L	C	G	N	G	G	L	F	L	D	F	E	X	E	R	G	A	D	G	A	X	T	G	.	.	.	Y	C	F	P	D	X	L	V	D	V	V	K	L	S	K	A	G	.	.	.	.	.	.	Q	R	D	L	A	H	N
Template Known Secondary structure		S	S															T	S	S									G	G	G	T	T								T								.	.	.		S														T	T	.	.	.	.	.	.
Template Predicted Secondary structure																																																	.	.	.																		.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.				.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.							.	.	.	.	.	240	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	C	A	H	V	R	E	L	H	D	F	Y	G	P	A	K	G	Y	R	I	A	R	K	H	V	S	W	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	D	A	H	L	P	L	I	R	Y	E	H	Q	Q	G	V	G	L	S	V	R	K	Y	V	L	K	K	R
Template Known Secondary structure															S	T	T													T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions