Job Description P0ABT5 Confidence 100.00% Date Thu Jan 5 11:16:20 GMT 2012 Rank 2 Aligned Residues 303 % Identity 25% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		L	R	N	R	L	I	A	A	P	M	A	G	I	T	D	R	P	F	R	T	L	C	Y	E	M	G	A	G	.	L	T	V	S	E	M	M	S	S	N	P	Q	V	W	E	S	D	K	S	R	L	R	M	V	H	I	D	E	P	G	I	R	T	V	Q	I	A	G	S	D	P	K	E	M	A	D	A	A	R	I	N
Query Conservation																														.
Alig confidence																														.																				.	.
Template Conservation																																																		.	.
Template Sequence		L	D	P	R	L	S	V	A	P	X	V	D	R	T	D	R	H	F	R	F	L	V	R	Q	V	S	L	G	V	R	L	Y	T	E	X	T	V	D	Q	A	V	L	R	G	N	R	E	R	.	.	L	L	A	F	R	P	E	E	H	P	I	A	L	Q	L	A	G	S	D	P	K	S	L	A	E	A	A	R	I	G
Template Known Secondary structure					S							T	T	T		S												S	S	S	B														S					.	.						G	G	G		S								S
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		V	E	S	G	A	Q	I	I	D	I	N	M	G	C	P	A	K	K	V	N	R	K	L	A	G	S	A	L	L	Q	Y	P	D	V	V	K	S	I	L	T	E	V	V	N	A	V	D	V	P	V	T	L	K	I	R	T	G	W	.	.	A	P	E	H	R	N	C	E	E	I	A	Q	L	A	E	D	C	G	I	Q
Query Conservation																																																												.	.
Alig confidence																																																												.	.
Template Conservation
Template Sequence		E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V	T	V	K	X	R	L	G	L	E	G	K	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K
Template Known Secondary structure				T	T		S										S							T		G	G	G	G	G	G														T	T		S	S								S		B	T	T																	T	T
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.								.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.											.
Query SS confidence																					.	.	.	.	.	.	.											.
Query Sequence		A	L	T	I	H	G	R	T	R	A	C	L	F	N	G	E	A	E	Y	.	.	.	.	.	.	.	D	S	I	R	A	V	K	Q	K	V	.	S	I	P	V	I	A	N	G	D	I	T	D	P	L	K	A	R	A	V	L	D	Y	T	G	A	D	A	L	M	I	G	R	A	A	Q	G	R	P	W	I	F	R	E
Query Conservation																					.	.	.	.	.	.	.											.
Alig confidence																					.	.	.	.	.	.	.											.																					.	.
Template Conservation																																																											.	.
Template Sequence		V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A	L	F	H	L	.	.	K	R	V	D	G	V	X	L	G	R	A	V	Y	E	D	P	F	V	L	E	E
Template Known Secondary structure								S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S						S	S			S									.	.	T	T	S	S					S							G	G	G	G	T	T
Template Predicted Secondary structure																																																											.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	H	Y	L	D	T	G	E	L	L	P	P	L	P	L	A	E	V	K	R	L	L	C	A	H	V	R	E	L	H	D	F	Y	G	P	A	K	G	Y	R	I	A	R	K	H	V	S	W	Y	L	Q	E	H	A	P	N	D	Q	F	R	R	T	F	N	A	I	E	D	A	S	E	Q	L	E	A	L	E	A	Y
Query Conservation
Alig confidence														.	.	.	.	.
Template Conservation														.	.	.	.	.
Template Sequence		A	D	R	R	V	F	G	L	P	R	R	P	.	.	.	.	.	S	R	L	E	V	A	R	R	X	R	A	Y	L	E	E	E	V	L	K	G	T	P	P	W	A	V	L	R	H	X	L	N	L	F	R	G	R	P	K	G	R	L	W	R	R	L	L	S	E	G	R	S	L	Q	A	L	D	R	A	L	R	L	X
Template Known Secondary structure						T	S			S				.	.	.	.	.																		T	T	T			T					T	T	S	G	G	G	G	T	T	S	T	T													S
Template Predicted Secondary structure														.	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.						250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		317	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		313	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions