Job Description P0ABT5 Confidence 96.77% Date Thu Jan 5 11:16:20 GMT 2012 Rank 350 Aligned Residues 197 % Identity 15% Template c2yxgD_ PDB info PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa) Resolution 2.20 Å

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	K	E	M	A	D	A	A	R	I	N	V	E	S	G	A	Q	I	I	D	I	N	M	G	C	P	A	K	K	V	N	R	K	L	A	G	S	A	L	L	Q	Y	P	D	V	V	K	S	I	L	T	E	V	V	N	A	V	D	V	P	V	T	L	K	I	R	T	G	W	A	P	E	H	R	N	C	E	E	I
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.																															.
Template Conservation																												.	.	.	.	.	.	.	.	.	.																															.
Template Sequence		D	F	D	G	L	E	E	N	I	N	F	L	I	E	N	G	V	S	G	I	V	A	V	G	T	T	.	.	.	.	.	.	.	.	.	.	G	E	S	P	T	L	S	H	E	E	H	K	K	V	I	E	K	V	V	D	V	V	N	G	R	V	Q	V	I	A	.	G	A	G	S	N	C	T	E	E	A	I	E	L
Template Known Secondary structure																T	T		S					S	S	T	T	.	.	.	.	.	.	.	.	.	.	T	T	G	G	G	S																	T	T	S	S					.					S	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.																															.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.											.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200						.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																																															.		.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.		.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	L	A	E	D	C	G	I	Q	A	L	T	I	H	G	R	T	R	A	C	L	F	N	G	E	A	E	Y	D	S	I	R	A	V	K	Q	K	V	S	I	P	V	I	A	.	N	.	.	.	.	.	G	D	I	T	D	P	L	K	A	R	A	V	L	D	Y	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																															.		.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.																								.		.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.
Template Sequence		S	V	F	A	E	D	V	G	A	D	A	V	L	S	I	T	P	Y	Y	N	K	.	P	T	Q	E	G	L	R	K	H	F	G	K	V	A	E	S	I	N	L	P	I	V	L	Y	N	V	P	S	R	T	A	V	N	L	E	P	K	T	V	K	L	L	A	E	E	Y	S	N	I	S	A	V	K	E	A	N	P	N
Template Known Secondary structure									T		S									S	S		.																		S	S												S																T	T									S
Template Predicted Secondary structure																							.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
																														216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	A	D	A	L	M	I	G	R	A	A	Q	G	R	P	W	I	F	R	E	I	Q	H	Y	L	D	T	G	E	L	L	P	P	L	P	L	A	E	V	K	R	L	L	C	A	H	V	R	E	L	H
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																	.	.	.	.	.	.
Template Conservation																																										.																	.	.	.	.	.	.
Template Sequence		L	S	Q	V	S	E	L	I	H	D	A	K	I	T	V	L	S	G	N	D	E	L	T	L	P	I	I	A	L	G	G	K	G	V	I	S	V	V	A	N	.	I	V	P	K	E	F	V	E	M	V	N	Y	A	L	E	G	.	.	.	.	.	.	D	F	E	K	A	R	E	I	H	Y	K	L	F	P	L	M	K
Template Known Secondary structure												T							S	S	G	G	G								T							S	G	G	G	.	T															T	.	.	.	.	.	.
Template Predicted Secondary structure																																										.																	.	.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.							.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	Y	G	P	A	K	G	Y	R	I	A	R	K	H	V	S	W	Y	L	Q	E	H	A	P	N
Query Conservation
Alig confidence													.	.								.
Template Conservation													.	.								.
Template Sequence		A	M	F	I	E	T	N	P	I	P	V	.	.	K	T	A	L	N	M	M	.	G	R	P	A	G
Template Known Secondary structure			T	T	S	S	S	T	T				.	.							T	.	T		S
Template Predicted Secondary structure													.	.								.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.		.	.	260	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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