Job Description P0ABT5 Confidence 97.13% Date Thu Jan 5 11:16:20 GMT 2012 Rank 319 Aligned Residues 190 % Identity 15% Template c2vc6A_ PDB info PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: structure of mosa from s. meliloti with pyruvate bound Resolution 1.95 Å

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	K	E	M	A	D	A	A	R	I	N	V	E	S	G	A	Q	I	I	D	I	N	M	G	C	P	A	K	K	V	N	R	K	L	A	G	S	A	L	L	Q	Y	P	D	V	V	K	S	I	L	T	E	V	V	N	A	V	D	V	P	V	T	L	K	I	R	T	G	W	A	P	E	H	R	N	C	E	E	I
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.																																					.
Template Conservation																										.	.	.	.	.	.	.	.	.	.																																					.
Template Sequence		D	E	V	A	L	H	D	L	V	E	W	Q	I	E	E	G	S	F	G	L	V	P	C	G	.	.	.	.	.	.	.	.	.	.	T	T	G	E	S	P	T	L	S	K	S	E	H	E	Q	V	V	E	I	T	I	K	T	A	N	G	R	V	P	V	I	A	G	A	G	S	.	N	S	T	A	E	A	I	A	F
Template Known Secondary structure																T	T		S				T	T	S	.	.	.	.	.	.	.	.	.	.	G	G	G	T	G	G	G	S																	T	T	S	S		B							.	S	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.																																					.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.											.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200							.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	L	A	E	D	C	G	I	Q	A	L	T	I	H	G	R	T	R	A	C	L	F	N	G	E	A	E	Y	D	S	I	R	A	V	K	Q	K	V	S	I	P	V	I	A	N	.	.	.	.	.	.	G	D	I	T	D	P	L	K	A	R	A	V	L	D	Y	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																											.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.
Template Sequence		V	R	H	A	Q	N	A	G	A	D	G	V	L	I	V	S	P	Y	Y	.	N	K	P	T	Q	E	G	I	Y	Q	H	F	K	A	I	D	A	A	S	T	I	P	I	I	V	Y	N	I	P	G	R	S	A	I	E	I	H	V	E	T	L	A	R	I	F	E	D	C	P	N	V	K	G	V	D	A	T	G	N	L
Template Known Secondary structure								T	T		S									S	.	S																			S	S												S																T	T							S			T
Template Predicted Secondary structure																					.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
																															216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	A	D	A	L	M	I	G	R	A	A	Q	G	R	P	W	I	F	R	E	I	Q	H	Y	L	D	T	G	E	L	L	P	P	L	P	L	A	E	V	K	R	L	L	C	A	H	V	R	E	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																.	.	.	.	.	.	.
Template Conservation																																													.																.	.	.	.	.	.	.
Template Sequence		L	R	P	S	L	E	R	M	A	C	G	E	D	F	N	L	L	T	G	E	D	G	T	A	L	G	Y	M	A	H	G	G	H	G	C	I	S	V	T	A	N	V	A	.	P	A	L	C	A	D	F	Q	Q	A	C	L	N	G	D	.	.	.	.	.	.	.	F	A	A	A	L	K	L	Q	D	R	L	M	P	L
Template Known Secondary structure											S		T	T	S	B				S		G	G	G							T	T							S	G	G	G	T		.													T	T		.	.	.	.	.	.	.
Template Predicted Secondary structure																																													.																.	.	.	.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.								.	.	.	.	230	.	.	.	.	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	F	Y	G	P	A	K	G	Y	R	I	A	R	K	H	V	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	R	A	L	F	L	E	T	N	P	A	G	A	K	Y	A	L	Q
Template Known Secondary structure					T	T	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions