Job Description P0ABT5 Confidence 97.80% Date Thu Jan 5 11:16:20 GMT 2012 Rank 257 Aligned Residues 223 % Identity 15% Template c2v9dB_ PDB info PDB header:lyase Chain: B: PDB Molecule:yage; PDBTitle: crystal structure of yage, a prophage protein belonging to2 the dihydrodipicolinic acid synthase family from e. coli3 k12 Resolution 2.15 Å

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	K	E	M	A	D	A	A	R	I	N	V	E	S	G	A	Q	I	I	D	I	N	M	G	C	P	A	K	K	V	N	R	K	L	A	G	S	A	L	L	Q	Y	P	D	V	V	K	S	I	L	T	E	V	V	N	A	V	D	V	P	V	T	L	K	I	R	T	G	W	A	P	E	H	R	N	C	E	E	I
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation																										.	.	.	.	.	.	.	.	.	.																																				.
Template Sequence		D	K	P	G	T	A	A	L	I	D	D	L	I	K	A	G	V	D	G	L	F	F	L	G	.	.	.	.	.	.	.	.	.	.	S	G	G	E	F	S	Q	L	G	A	E	E	R	K	A	I	A	R	F	A	I	D	H	V	D	R	R	V	P	V	L	I	G	T	G	.	G	T	N	A	R	E	T	I	E	L
Template Known Secondary structure																T	T		S					S	S	.	.	.	.	.	.	.	.	.	.	T	T	T	T	G	G	G	S																	T	T	S	S								.	S	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.																																				.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.											.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200						.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																																															.		.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.		.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	L	A	E	D	C	G	I	Q	A	L	T	I	H	G	R	T	R	A	C	L	F	N	G	E	A	E	Y	D	S	I	R	A	V	K	Q	K	V	S	I	P	V	I	A	.	N	.	.	.	.	.	G	D	I	T	D	P	L	K	A	R	A	V	L	D	Y	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																															.		.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																										.		.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.
Template Sequence		S	Q	H	A	Q	Q	A	G	A	D	G	I	V	V	I	N	P	Y	Y	.	W	K	V	S	E	A	N	L	I	R	Y	F	E	Q	V	A	D	S	V	T	L	P	V	X	L	Y	N	F	P	A	L	T	G	Q	D	L	T	P	A	L	V	K	T	L	A	D	S	R	S	N	I	I	G	I	K	D	T	I	D	S
Template Known Secondary structure									T		S								S	S	.	S																			S	S												S																T	T									S
Template Predicted Secondary structure																					.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
																																			216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	A	D	A	L	M	I	G	R	A	A	Q	G	R	P	W	I	F	R	E	I	Q	H	Y	L	D	T	G	E	L	L	P	P	L	P	L	A	E	V	K	R	L	L	C	A	H
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																.	.	.	.	.	.
Template Conservation																																																.																.	.	.	.	.	.
Template Sequence		V	A	H	L	R	S	X	I	H	T	V	K	G	A	H	P	H	F	T	V	L	C	G	Y	D	D	H	L	F	N	T	L	L	L	G	G	D	G	A	I	S	A	S	G	N	F	.	A	P	Q	V	S	V	N	L	L	K	A	W	R	D	G	.	.	.	.	.	.	D	V	A	K	A	A	G	Y	H	Q	T	L
Template Known Secondary structure																	T	T						S	S	G	G	G							T	T							G	G	G	T	T	.														T	T	.	.	.	.	.	.
Template Predicted Secondary structure																																																.																.	.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240							.	.	.	.	.	.	.	.	.	250	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	E	L	H	D	F	Y	G	P	A	K	G	Y	R	I	A	R	K	H	V	S	W	Y	L	Q	E	H	A	P	N	D	Q	F	R	R	T	F	N	A	I	E	D	A	S	E	Q	L	E	A	L	E	A	Y	F	E	N	F
Query Conservation
Alig confidence																							.	.																			.	.
Template Conservation																							.	.																			.	.
Template Sequence		L	Q	I	P	Q	X	Y	Q	L	D	T	P	F	V	N	V	I	K	E	A	I	.	.	V	L	C	G	R	P	V	S	T	H	V	L	P	P	A	S	P	L	.	.	D	E	P	R	K	A	Q	L	K	T	L	L	Q	Q	L
Template Known Secondary structure				G	G	G	G	G	G	G	S	S	S										.	.			T	T						B			T	T	S				.	.															T
Template Predicted Secondary structure																							.	.																			.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.			.	.	.	.	.	.	.	.	300	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions