Job Description P0ABT5 Confidence 88.49% Date Thu Jan 5 11:16:20 GMT 2012 Rank 491 Aligned Residues 234 % Identity 12% Template c2cw6B_ PDB info PDB header:lyase Chain: B: PDB Molecule:hydroxymethylglutaryl-coa lyase, mitochondrial; PDBTitle: crystal structure of human hmg-coa lyase: insights into2 catalysis and the molecular basis for3 hydroxymethylglutaric aciduria Resolution 2.10 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	F	R	T	L	C	Y	E	M	G	A	G	L	T	V	S	E	M	M	S	S	N	P	Q	V	W	E	S	D	K	S	R	L	R	M	V	H	I	D	E	P	G	I	R	T	V	Q	I	A	G	S	D	P	K	E	M	A	D	A	A	R	I	N	V	E	S	G	A	Q	I	I	D	I	N	M	G	C	P	A
Query Conservation
Alig confidence																																																											.	.	.	.																		.
Template Conservation																																																											.	.	.	.																		.
Template Sequence		I	K	L	I	D	M	L	S	E	A	G	L	S	V	I	E	T	T	S	F	V	S	P	K	W	V	P	Q	M	G	D	H	T	E	V	L	K	G	I	Q	K	F	P	G	I	N	Y	P	V	L	T	P	N	L	K	G	F	.	.	.	.	E	A	A	V	A	A	G	A	K	E	V	V	I	F	G	A	A	.	S
Template Known Secondary structure											T	T		S										T	T	T		G	G	G	T	T								S				T	T		B							S					.	.	.	.						T	T		S								S	.
Template Predicted Secondary structure																																																											.	.	.	.																		.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.					.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.							.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.
Query Sequence		K	K	V	N	R	K	L	A	G	S	A	L	L	Q	Y	P	D	V	V	K	S	I	L	T	E	V	V	N	A	V	D	V	P	V	T	L	K	I	R	T	G	W	A	.	.	.	.	.	.	P	E	H	R	N	C	E	E	I	A	Q	L	A	E	D	C	G	I	Q	A	L	T	I	H	G	R	T	R	A	C	L
Query Conservation																																													.	.	.	.	.	.
Alig confidence																														.															.	.	.	.	.	.																												.	.
Template Conservation																														.																																																.	.
Template Sequence		E	L	F	T	K	K	N	I	N	C	S	I	E	E	S	F	Q	R	F	D	A	I	L	K	A	A	Q	S	.	A	N	I	S	V	R	G	Y	V	S	C	A	L	G	C	P	Y	E	G	K	I	S	P	A	K	V	A	E	V	T	K	K	F	Y	S	M	G	C	Y	E	I	S	L	G	D	T	I	.	.	G	V
Template Known Secondary structure									T	S	S		T	T	T															.	T	T									S	T	T		B	T	T	T	B	S																T	T		S							T	T	.	.
Template Predicted Secondary structure																														.																																																.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.			.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.				200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.											.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																			.							.	.	.																														.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.							.	.	.																														.	.	.	.	.	.	.	.	.	.
Query Sequence		F	N	G	E	A	E	Y	D	S	I	R	A	V	K	Q	K	V	.	S	I	P	V	I	A	.	.	.	N	G	D	I	T	D	P	L	K	A	R	A	V	L	D	Y	T	G	A	D	A	L	M	I	G	R	A	A	Q	.	.	.	.	.	.	.	.	.	.	G	R	P	W	I	F	R	E	I	Q	H	Y	L	D
Query Conservation																			.							.	.	.																														.	.	.	.	.	.	.	.	.	.
Alig confidence																			.							.	.	.																	.													.	.	.	.	.	.	.	.	.	.						.
Template Conservation																																													.																												.
Template Sequence		G	T	P	G	I	M	K	D	M	L	S	A	V	M	Q	E	V	P	L	A	A	L	A	V	H	C	H	D	T	Y	G	Q	A	L	A	N	T	L	M	A	L	Q	M	.	G	V	S	V	V	D	S	S	V	A	G	L	G	G	C	P	Y	A	Q	G	A	S	G	N	L	A	T	.	E	D	L	V	Y	M	L	E
Template Known Secondary structure																		S		G	G	G						B		T	T	S												T	.	T							B	T	T	S					T	T	S	S	S				B		B		.
Template Predicted Secondary structure																																													.																												.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	E	L	L	P	P	L	P	L	A	E	V	K	R	L	L	C	A	H	V	R	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	G	I	H	T	G	V	N	L	Q	K	L	L	E	A	G	N	F	I	C	Q	A	L
Template Known Secondary structure			T	T		B
Template Predicted Secondary structure
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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