Job Description P25534 Confidence 99.53% Date Thu Jan 5 11:42:01 GMT 2012 Rank 39 Aligned Residues 309 % Identity 13% Template c3i6dA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: crystal structure of ppo from bacillus subtilis with af Resolution 2.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.											.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.																												.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.																												.	.	.	.	.	.	.	.	.	.
Query Sequence		S	V	I	I	V	G	G	G	M	A	G	A	T	L	A	L	A	I	S	R	L	S	H	G	.	.	.	A	L	P	V	H	L	I	E	A	T	A	P	E	S	H	A	H	P	G	F	D	G	R	A	I	A	L	.	.	.	.	.	.	.	.	.	.	A	A	G	T	C	Q	Q	L	A	R	I	G	V	W	Q	S
Query Conservation																										.	.	.																												.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.																												.	.	.	.	.	.	.	.	.	.																.
Template Conservation																																																																																	.
Template Sequence		H	V	V	I	I	G	G	G	I	T	G	L	A	A	A	F	Y	M	E	K	E	I	K	E	K	N	L	P	L	E	L	T	L	V	E	A	S	P	R	V	G	G	K	I	Q	T	V	K	K	D	G	Y	I	I	E	R	G	P	D	S	F	L	E	R	K	K	S	A	P	Q	L	V	K	D	L	G	L	E	H	.
Template Known Secondary structure									S															T	T	T	T		S								S	S	S	S	S		T	T							T	T					S	S						T	T		T									T	T			T	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	D	C	A	T	A	I	T	T	V	H	V	S	D	R	G	H	A	G	F	V	T	L	A	A	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	L	L	V	N	N	A	T	G	Q	S	Y	V	L	V	N	R	T	L	H	P	M	P	K	S	G	K	A	R	A	A	M	D	F	I	L	P	A	S	K	T	K	D	D	Q	S	L	G	E	F	F	R	R	R	V	G	D	E	V	V	E	N	L	I	E	P	L	L	S	G	I	Y	A	G	D	I	D	K	L
Template Known Secondary structure		.	.	T														S	S										S									S				S	S	S	S			B									S								T								T	T		S		T	T	T	B
Template Predicted Secondary structure		.	.
Template SS confidence
				86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
						97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	Y	Q	L	A	A	L	G	Q	V	V	E	L	H	N	V	G	Q	R	L	F	A	L	L	R	K	A	P	G	V	T	L	H	C	P	D	R	V	A	N	V	A	R	T	Q	S	H	V	E	V	T	L	E	S	G	E	T	L	T	G	R	V	L	V	A	A	D	G	T	H	S	A	L	A	T	A	C
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		S	L	M	S	T	F	P	Q	F	Y	Q	F	Q	T	L	S	T	G	L	Q	T	L	V	E	E	I	E	K	Q	L	K	L	T	K	V	Y	K	G	T	K	V	T	K	L	S	H	S	G	S	C	Y	S	L	E	L	D	N	G	V	T	L	D	A	D	S	V	I	V	T	A	P	H	K	A	A	A	G	M	L	S
Template Known Secondary structure		B						G	G	G							T	T		T										T			S						S										S	S	S						S	S	S						S						S									T	T
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		173	.								.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.												.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	V	.	.	.	.	.	.	.	D	W	Q	Q	E	P	Y	E	Q	L	A	V	I	A	N	V	A	T	S	V	A	H	E	G	R	A	F	E	R	F	T	Q	H	G	P	L	A	M	L	P	.	.	.	.	.	.	.	.	.	.	.	M	S	D	G	R	C	S	L	V	W	C	H	P	L	E	R	R	E	E	V
Query Conservation				.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	P	A	I	S	H	L	K	N	M	H	S	T	S	V	A	N	V	A	L	G	F	P	E	G	S	V	Q	M	E	H	E	G	T	G	F	V	I	S	R	N	S	D	F	A	I	T	A	C	T	W	T	N	K	K	W	P	H	A	A	P	E	G	K	T	L	L	R	A	Y	V	G	K	A	G	D	E	S	I
Template Known Secondary structure		T	S	T	T						T														S	S	T	T				S	S		S	S						S	T	T			S												G	G	G	S		T	T											S	S			G	G
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.																	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	W	S	D	E	K	F	C	R	E	L	Q	S	A	F	G	W	R	L	G	K	I	T	H	A	G	K	R	S	A	Y	P	L	A	L	T	H	A	A	R	S	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	R	T	V	L	V	G	N	A	A	Q	T	L	H	P	I	A	G	Q	G
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.
Template Sequence		V	D	L	S	D	N	D	I	I	N	I	V	L	E	D	L	K	K	V	M	N	I	N	G	E	P	E	M	T	C	V	T	R	W	H	E	S	M	P	Q	Y	H	V	G	H	K	Q	R	I	K	E	L	R	E	A	L	A	S	A	Y	P	G	V	Y	M	T	G	A	S	F	E	.	.	.	.	.	.	G	V	G
Template Known Secondary structure		G	T	S														G	G	G	S				S			S															B	T	T																S	T	T					S	T	T	T	S	.	.	.	.	.	.			S
Template Predicted Secondary structure																																																																									.	.	.	.	.	.
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.							.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	L	G	M	R	D	V	M	S	L	A	E	T	L	T	Q	A	Q	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	D	C	I	D	Q	G	K	A	A	V	S	D	A	L	T	Y	L	F	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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