Job Description P25534 Confidence 99.43% Date Thu Jan 5 11:42:01 GMT 2012 Rank 47 Aligned Residues 313 % Identity 14% Template c3dmeB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved exported protein; PDBTitle: crystal structure of conserved exported protein from2 bordetella pertussis. northeast structural genomics target3 ber141 Resolution 1.70 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.														.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Query Sequence		M	S	V	I	I	V	G	G	G	M	A	G	A	T	L	A	L	A	I	S	R	L	S	H	G	A	L	P	V	H	L	I	E	A	T	A	P	E	S	H	A	H	P	G	F	D	G	R	A	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	A	G	T	C	Q	Q	L	A	R	I	G	.	.	.
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Alig confidence																							.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Template Conservation																							.	.	.
Template Sequence		I	D	C	I	V	I	G	A	G	V	V	G	L	A	I	A	R	A	L	A	A	.	.	.	G	G	H	E	V	L	V	A	E	A	A	E	G	I	G	T	G	T	S	S	R	N	S	E	V	I	H	A	G	I	Y	Y	P	A	D	S	L	K	A	R	L	C	V	R	G	K	H	L	L	Y	E	Y	C	A	A	R
Template Known Secondary structure										S													.	.	.	T	T								S	S	S	S	T	T		S	G	G	G	S	S									S	S		T	T
Template Predicted Secondary structure																							.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
																										65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	W	Q	S	L	A	D	C	A	T	A	I	T	T	V	H	V	S	D	R	G	H	A	G	F	V	T	L	A	A	E	D	Y	Q	L	A	A	L	G	Q	V	V	E	L	H	N	V	G	Q	R	L	F	A	L	L	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	P	H	Q	R	L	G	K	L	I	V	A	T	S	D	A	E	A	S	Q	L	D	S	I	A	R	R	A	G	A	N	G	V	D	D	L	Q	H	I	D	G	A	A	A	R	R	L	E	P	A	L	H	C	T	A	A	L	V	S	P	S	T	G	I	V	D	S	H	A	L	M	L	A	Y	Q	G	D	A	E
Template Known Secondary structure		T														S					T	T											T	T																	T	T				S						T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.																											.
Query SS confidence																							.	.	.																											.
Query Sequence		K	A	P	G	V	T	L	H	C	P	D	R	V	A	N	V	A	R	T	Q	S	.	.	.	H	V	E	V	T	L	E	S	G	E	T	L	T	G	R	V	L	V	A	A	D	G	T	H	S	A	.	L	A	T	A	C	G	V	D	W	Q	Q	E	P	Y	E	Q	L	A	V	I	A	N	V	A	T	S	V	A	H
Query Conservation																							.	.	.																											.
Alig confidence				.																			.	.	.																											.
Template Conservation				.
Template Sequence		S	D	.	G	A	Q	L	V	F	H	T	P	L	I	A	G	R	V	R	P	E	G	G	F	E	L	D	F	G	G	A	E	P	M	T	L	S	C	R	V	L	I	N	A	A	G	L	H	A	P	G	L	A	R	R	I	E	G	I	P	R	D	S	I	P	P	E	Y	L	C	K	G	S	Y	F	T	L	A	G	R
Template Known Secondary structure			T	.	T						S										T	T	S	S							S	S	S														G	G	G							T			T	S		G	G	G	S															S	S
Template Predicted Secondary structure				.
Template SS confidence
		162	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		197	.	.	200	.	.	.	.	.					.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure											.	.	.	.																			.	.
Query SS confidence											.	.	.	.																			.	.
Query Sequence		E	G	R	A	F	E	R	F	T	.	.	.	.	Q	H	G	P	L	A	M	L	P	M	S	D	G	R	C	S	L	V	.	.	W	C	H	P	L	E	R	R	E	E	V	L	S	W	S	D	E	K	F	C	R	E	L	Q	S	A	F	G	W	R	L	G	K	I	T	H	A	G	K	R	S	A	Y	P	L	A	L
Query Conservation											.	.	.	.																			.	.
Alig confidence											.	.	.	.																			.	.																													.
Template Conservation																																																															.
Template Sequence		A	P	F	S	R	L	I	Y	P	V	P	Q	H	A	G	L	G	V	H	L	T	L	D	L	G	G	Q	A	K	F	G	P	D	T	E	W	I	A	T	E	D	Y	T	L	D	P	R	R	A	D	V	F	Y	A	A	V	R	S	Y	W	P	.	A	L	P	D	G	A	L	A	P	G	Y	T	G	I	R	P	K	I
Template Known Secondary structure			S		S	S						T	T		S	S									T	T	S												S	S							G	G	G	G	T	T							T	T		T	.	T			T	T													S
Template Predicted Secondary structure																																																															.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		T	H	A	A	R	S	I	T	H	R	T	V	L	V	G	N	A	A	Q	T	L	H	P	I	A	G	Q	G	F	.	N	L	G	M	R	D	V	M	S	L	A	E	T	L	T	Q	A	Q	E
Query Conservation																															.
Alig confidence																															.
Template Conservation
Template Sequence		S	G	P	H	E	P	A	A	D	F	A	I	A	G	P	A	S	H	G	V	A	G	L	V	N	L	Y	G	I	E	S	P	G	L	T	A	S	L	A	I	A	E	E	T	L	A	R	L	A
Template Known Secondary structure		S		T	T	S																T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions