Job Description P25534 Confidence 99.06% Date Thu Jan 5 11:42:01 GMT 2012 Rank 90 Aligned Residues 245 % Identity 16% Template c3d8xB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin reductase 1; PDBTitle: crystal structure of saccharomyces cerevisiae nadph dependent2 thioredoxin reductase 1 Resolution 2.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	I	I	V	G	G	G	M	A	G	A	T	L	A	L	A	I	S	R	L	S	H	G	A	L	P	V	H	L	I	E	A	T	A	P	E	S	H	A	H	P	G	F	D	G	R	A	I	A	L	A	A	G	T	C	Q	Q	L	A	R	I	G	V	W	Q	S	L	A	D	C	A	T	A	I	T	T	V	H	V
Query Conservation
Alig confidence																						.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	T	I	I	G	S	G	P	A	A	H	T	A	A	I	Y	L	A	R	.	.	.	A	E	I	K	P	I	L	Y	E	G	M	M	A	N	G	I	A	A	G	G	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									S													.	.	.	T	T									S	S	G	G	G			T	T		G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.				.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		S	D	R	G	H	A	G	F	V	T	L	A	A	E	D	Y	Q	L	A	A	L	G	Q	V	V	E	L	H	N	V	G	Q	R	L	F	A	L	L	R	K	A	P	G	V	T	L	H	C	P	D	R	V	A	N	V	A	R	T	Q	S	H	V	E	.	V	T	L	E	S	G	E	T	L	T	G	R	V	L	V	A
Query Conservation																																																																	.
Alig confidence		.	.	.	.	.	.	.	.	.																																																							.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	T	T	T	T	E	I	E	N	F	P	G	F	P	D	G	L	T	G	S	E	L	M	D	R	M	R	E	Q	S	T	K	F	G	T	E	I	I	T	E	T	V	S	K	V	D	L	S	S	K	P	F	K	L	W	T	E	F	N	E	D	A	E	P	V	T	T	D	A	I	I	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	G	G		S					S	T	T		T	T																		T	T														S	S	S	S						T	T		T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	G	T	H	S	A	L	A	T	A	C	G	V	D	W	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	G	A	S	A	K	R	M	H	L	P	G	E	E	T	Y	W	Q	K	G	I	S	A	C	A	V	C	D	G	A	V	P	I	F	R	N	K	P	L	A	V	I	G	G	G	D	S	A	C	E	E	A	Q	F	L	T	K	Y	G	S	K	V	F	M	L	V	R	K	D	H	L	R	A	S	T	I	M	Q	K
Template Known Secondary structure													T	T					B	T	T	T			S						T	T	S	G	G	G	T	T	S							S	S											T	T	T	S	S							S	S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
								178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	Q	E	P	Y	E	Q	L	A	V	I	A	N	V	A	T	S	V	A	H	E	G	R	A	F	E	R	F	T	Q	H	G	P	L	A	M	L	P	M	S	D	G	R	C	S	L	V	W	C	H	P	L	E	R	R	E	E	V	L	S	W	S	D	E	K	F	C	R	E	L	Q	S	A	F	G
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																																															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	E	K	N	E	K	I	E	I	L	Y	N	T	V	A	L	E	A	K	G	D	G	K	L	L	N	A	L	R	I	K	N	T	K	K	N	E	E	T	D	L	P	V	S	G	L	F	Y	A	I	G	H	T	P	A	T	K	I	V	A	G	Q	V	D	T	D	E	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T						S									S	S	S	S									T	T	T	T								S						S							G	G	G	T	T	T	S		B		T	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	R	L	G	K	I	T	H	A	G	K	R	S	A	Y	P	L	A	L	T	H	A	A	R	S	I	T	H	R	T	V	L	V	G	N	A	A	Q	T	L	H	P	I	A	G	Q	G	F	N	L	G	M	R	D	V	M	S	L	A	E	T	L	T	Q	A	Q	E	R	G	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	A	G	Y	I	K	T	V	P	G	S	S	L	T	S	V	P	G	F	F	A	A	G	D	V	Q	D	S	K	Y	R	Q	.	.	.	.	A	I	T	S	A	G	S	G	C	M	A	A	L	D	A	E	K	Y	L	T	S	L	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	T	S		B				T	T	S				S	S	T	T					G	G	G	G		S	S				.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template SS confidence
														266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.					.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions