Job Description P25534 Confidence 99.55% Date Thu Jan 5 11:42:01 GMT 2012 Rank 37 Aligned Residues 306 % Identity 18% Template c2olnA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nikd protein; PDBTitle: nikd, an unusual amino acid oxidase essential for2 nikkomycin biosynthesis: closed form at 1.15 a resolution Resolution 1.15 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.												.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	V	I	I	V	G	G	G	M	A	G	A	T	L	A	L	A	I	S	R	L	S	H	G	A	L	P	V	H	L	I	E	A	T	A	P	E	S	H	A	H	P	G	F	D	G	R	A	I	A	.	.	.	.	.	.	.	.	.	.	.	L	A	A	G	T	C	Q	Q	L	A	R	I	G	V	W	Q	S	L
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.																												.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation																							.	.	.																																																			.	.
Template Sequence		Y	D	V	V	V	V	G	G	G	P	V	G	L	A	T	A	W	Q	V	A	E	.	.	.	R	G	H	R	V	L	V	L	E	R	H	T	F	F	N	E	N	G	G	T	S	G	A	E	R	H	W	R	L	Q	Y	T	Q	E	D	L	F	R	L	T	L	E	T	L	P	L	W	R	A	L	.	.	E	S	R	C
Template Known Secondary structure										S													.	.	.	T	T								S	S		T	T		S	S	S	S			S	S						S			S	S																		.	.
Template Predicted Secondary structure																							.	.	.																																																			.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90																																			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	C	A	T	A	I	T	T	V	H	V	S	D	R	G	H	A	G	F	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	A	A	E	D	Y	Q	L	A	A	L	G	Q	V	V	E	L	H	N	V	G	Q	R	L
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	R	R	L	I	H	E	I	G	S	L	W	F	G	D	T	D	V	V	T	N	E	G	Q	I	S	G	T	A	A	M	M	D	K	L	S	V	R	Y	E	W	L	K	A	T	D	I	E	R	R	F	G	F	R	G	L	P	R	D	Y	E	G	F	L	Q	P	D	G	G	T	I	D	V	R	G	T	L	A	A	L
Template Known Secondary structure		T															S	S			B	T	T	B												T	T																			S			T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	L	L	R	K	A	P	G	V	T	L	H	C	P	D	R	V	A	N	V	A	R	T	Q	S	H	V	E	V	T	L	E	S	G	E	T	L	T	G	R	V	L	V	A	A	D	G	T	H	S	A	L	A	T	A	C	G	V	D	W	Q	Q	E	P	Y	E	Q	L	A	V	I	A	N	V	A	T	S	V	A
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		F	T	L	A	Q	A	A	.	G	A	T	L	R	A	G	E	T	V	T	E	L	V	P	D	A	D	G	V	S	V	T	T	D	R	G	T	Y	R	A	G	K	V	V	L	A	C	G	P	Y	T	N	D	L	L	E	P	L	G	A	R	L	A	Y	S	V	Y	E	M	A	I	A	A	Y	R	Q	A	T	P	V	T
Template Known Secondary structure								T	.	T						S										T	T							S	S													G	G	G						G	G	G	T																	B		S			S
Template Predicted Secondary structure									.
Template SS confidence
		160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.						.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.							.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																								.	.	.	.	.	.
Query SS confidence												.	.	.	.	.																								.	.	.	.	.	.
Query Sequence		H	E	G	R	A	F	E	R	F	T	.	.	.	.	.	Q	H	G	P	L	A	M	L	P	M	S	D	G	R	C	S	L	V	W	C	H	P	L	.	.	.	.	.	.	E	R	R	E	E	V	L	S	W	S	D	E	K	F	C	R	E	L	Q	S	A	F	G	W	R	L	G	K	I	T	H	A	G	K	R	S
Query Conservation												.	.	.	.	.																								.	.	.	.	.	.
Alig confidence												.	.	.	.	.																								.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	P	F	W	F	A	F	Q	Q	P	T	P	Q	D	T	N	L	F	Y	G	F	G	H	N	P	W	A	P	G	E	F	V	R	C	G	P	D	F	E	V	D	P	L	D	H	P	S	A	A	T	G	V	A	D	R	R	Q	M	D	R	L	S	G	W	L	R	D	H	L	P	T	V	D	P	D	P	V	R	T
Template Known Secondary structure														S	S	S											S	S	S	S	S	S											S			S	S	G	G	G			S	S																		T	T	B		S	S		S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.								.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.
Query Sequence		A	Y	P	L	A	L	T	H	A	A	R	S	I	T	H	R	T	V	L	V	G	N	A	A	Q	T	L	H	P	.	.	.	.	.	.	.	I	A	G	Q	G	F	N	L	G	M	R	D	V	M	S	L	A	E	T	L	T	Q
Query Conservation																															.	.	.	.	.	.	.
Alig confidence										.	.	.																			.	.	.	.	.	.	.
Template Conservation										.	.	.
Template Sequence		S	T	C	L	A	V	L	P	.	.	.	T	D	P	E	R	Q	F	F	L	G	T	A	R	D	L	M	T	H	G	E	K	L	V	V	Y	G	A	G	W	A	F	K	F	V	P	L	F	G	R	I	C	A	D	L	A	V	E
Template Known Secondary structure										.	.	.	S	S	T	T								S	T	T	T	S	T	T	G	G	G							S	S		G	G	G
Template Predicted Secondary structure										.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.				.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions