Job Description P25534 Confidence 99.55% Date Thu Jan 5 11:42:01 GMT 2012 Rank 36 Aligned Residues 301 % Identity 11% Template c1y56B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:sarcosine oxidase; PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii Resolution 2.86 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40										.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.
Query Sequence		S	V	I	I	V	G	G	G	M	A	G	A	T	L	A	L	A	I	S	R	L	S	H	G	A	L	P	V	H	L	I	E	A	T	A	P	E	S	H	.	.	.	.	.	.	.	.	.	A	H	P	G	F	D	G	R	A	I	A	L	A	A	G	T	C	Q	Q	L	A	R	I	G	V	W	Q	S	L	A	D	C
Query Conservation																																									.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.																	.	.	.	.	.	.	.	.	.																								.	.	.
Template Conservation																						.	.	.																																																	.	.	.
Template Sequence		E	I	V	V	I	G	G	G	I	V	G	V	T	I	A	H	E	L	A	K	.	.	.	R	G	E	E	V	T	V	I	E	K	R	F	I	G	S	G	S	T	F	R	C	G	T	G	I	R	Q	Q	F	N	D	E	A	N	V	R	V	M	K	R	S	V	E	L	W	K	K	Y	.	.	.	S	E	E	Y	G	F
Template Known Secondary structure		S							S													.	.	.	T	T								S	S	S	T	T		S														S	S																		.	.	.					T
Template Predicted Secondary structure																						.	.	.																																																	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.				.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.																																	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	T	A	I	T	T	V	H	V	S	D	R	G	H	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	V	T	L	A	A	E	D	Y	Q	L	A	A	L	G	Q	V	V	E	L	H	N	V	G	Q	R	L	F	A	L	L	R
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	F	K	Q	T	G	Y	L	F	L	L	Y	D	D	E	E	V	K	T	F	K	R	N	I	E	I	Q	N	K	F	G	V	P	T	K	L	I	T	P	E	E	A	K	E	I	V	P	L	L	D	I	S	E	V	I	A	A	S	W	N	P	T	D	G	K	A	D	P	F	E	A	T	T	A	F	A	V	K	A	K
Template Known Secondary structure														S																	T	T														S	S	T	T				T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		K	A	P	G	V	T	L	H	C	P	D	R	V	A	N	V	A	R	T	Q	S	H	V	E	V	T	L	E	S	G	E	T	L	T	G	R	V	L	V	A	A	D	G	T	H	S	A	.	L	A	T	A	C	G	V	D	W	Q	Q	E	P	Y	E	Q	L	A	V	I	A	N	V	A	T	S	V	A	H	E	G	R
Query Conservation																																																	.
Alig confidence				.																																													.
Template Conservation				.
Template Sequence		E	Y	.	G	A	K	L	L	E	Y	T	E	V	K	G	F	L	I	E	N	N	E	I	K	G	V	K	T	N	K	G	I	I	K	T	G	I	V	V	N	A	T	N	A	W	A	N	L	I	N	A	M	A	G	I	K	T	K	I	P	I	E	P	Y	K	H	Q	A	V	I	T	Q	P	I	K	R	G	T	I	N
Template Known Secondary structure			T	.	T						S									S	S	S	B							T	T						S							G	G	G									T			S																		S	T	T	S	S
Template Predicted Secondary structure				.
Template SS confidence
		161	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	E	R	F	T	Q	H	G	P	L	A	M	L	P	M	S	D	G	R	C	S	L	V	W	C	H	P	L	E	R	R	E	E	V	L	S	W	S	D	E	K	F	C	R	E	L	Q	S	A	F	G	W	R	L	G	K	I	T	H	A	G	K	R	S	A	Y	P	L	A	L	T	H	A	A	R	S	I	T	H
Query Conservation
Alig confidence																																				.	.																																.	.	.	.
Template Conservation																																				.	.																																.	.	.	.
Template Sequence		P	M	V	I	S	F	K	Y	G	H	A	Y	L	T	Q	T	F	H	G	G	I	I	G	G	I	G	Y	E	I	G	P	T	Y	D	.	.	L	T	P	T	Y	E	F	L	R	E	V	S	Y	Y	F	T	K	I	I	P	A	L	K	N	L	L	I	L	R	T	W	.	.	.	.	A	G	Y	Y	A	K	T	P	D
Template Known Secondary structure		S					S	T	T	T	T							S	S	S							S			B	S	S				.	.																				G	G	G	G	G	S							.	.	.	.								T	T
Template Predicted Secondary structure																																				.	.																																.	.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.					.	.	.	.	.	310	.	.	.
		280	.	.	.	.	.	.	.	.	.						290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.
Query SS confidence												.	.	.	.	.
Query Sequence		R	T	V	L	V	G	N	A	A	Q	.	.	.	.	.	T	L	H	P	I	A	G	Q	G	F	N	L	G	M	R	D	V	M	S	L	A	E	T	L	T	Q
Query Conservation												.	.	.	.	.
Alig confidence												.	.	.	.	.
Template Conservation
Template Sequence		S	N	P	A	I	G	R	I	E	E	L	N	D	Y	Y	I	A	A	G	F	S	G	H	G	F	M	M	A	P	A	V	G	E	M	V	A	E	L	I	T	K
Template Known Secondary structure		S								S	S	S	B	T								T	T
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions