Job Description P25534 Confidence 98.94% Date Thu Jan 5 11:42:01 GMT 2012 Rank 96 Aligned Residues 300 % Identity 13% Template c1kifE_ PDB info PDB header:flavoprotein Chain: E: PDB Molecule:d-amino acid oxidase; PDBTitle: d-amino acid oxidase from pig kidney Resolution 2.60 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.																			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	V	I	I	V	G	G	G	M	A	G	A	T	L	A	L	A	I	S	R	L	S	H	G	A	L	P	V	H	L	I	E	A	T	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	H	A	H	P	G	F	D	G	R	A	I	A	L	A	A	G	T	C	Q	Q	L	A	R
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.
Template Sequence		M	R	V	V	V	I	G	A	G	V	I	G	L	S	T	A	L	C	I	H	E	.	.	.	R	Y	H	S	V	L	Q	P	L	D	V	K	V	Y	A	D	R	F	T	P	F	T	T	T	D	V	A	A	G	L	W	Q	P	Y	T	S	E	P	S	N	P	Q	E	A	N	W	N	Q	Q	T	F	N	Y	L	L	S
Template Known Secondary structure										S													.	.	.			T	T	T	S	S	S								S			T	T	S	S	S	G	G	G	S			B					S	S			S	S	T															T
Template Predicted Secondary structure																							.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.				.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.																			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	G	V	W	Q	S	L	A	D	C	A	T	A	I	T	T	V	H	V	S	D	R	G	H	A	G	F	V	T	L	A	A	E	D	Y	Q	L	A	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	V	V	E	L	H	N	V	G	Q	R	L	F	A	L	L	R	K	A	P	G
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																																																																																.
Template Sequence		H	I	G	S	P	N	A	A	N	M	G	L	T	P	V	S	G	Y	N	L	F	R	E	A	V	P	D	P	Y	W	K	D	M	V	L	G	F	R	K	L	T	P	R	E	L	D	M	F	P	D	Y	R	Y	G	W	F	N	T	S	L	I	L	E	G	R	K	Y	L	Q	W	L	T	E	R	L	T	E	R	.	G
Template Known Secondary structure		T	T	T	S	T	T	T	T	T	T	T											S	S						T	T	T	T	T	S												T	T	S	T	T																												T	.	T
Template Predicted Secondary structure																																																																																.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	L	H	C	P	D	R	V	A	N	V	A	R	T	Q	S	H	V	E	V	T	L	E	S	G	E	T	L	T	G	R	V	L	V	A	A	D	G	T	H	S	A	L	A	T	A	C	G	V	D	W	Q	Q	E	P	Y	E	Q	L	A	V	I	A	N	V	A	T	S	V	A	H	E	G	R	A	F	E	R	F
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Sequence		V	K	F	F	L	R	.	.	.	.	.	.	.	.	.	.	.	.	K	V	E	S	F	E	E	V	A	R	G	G	A	D	V	I	I	N	C	T	G	V	W	A	.	.	.	G	V	L	Q	P	D	P	L	L	Q	P	G	R	G	Q	I	I	K	V	D	A	P	W	L	K	N	F	I	I	T	H	D	L	E	R
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.											T	T		S							G	G	G		.	.	.				S			T	T														T	T			S							T	T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template SS confidence
		157	.	.	160	.	.													.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.				.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	H	G	P	L	A	M	L	P	M	S	D	G	R	C	S	L	V	W	C	H	P	L	E	R	R	E	E	V	L	S	W	S	D	E	K	F	C	R	E	L	Q	S	A	F	G	W	R	L	G	K	I	T	H	A	G	K	R	S	A	Y	P	L	A	L	T	H	A	A	R	S	I	T	H	R	T	V	L	V
Query Conservation
Alig confidence																																																																						.	.
Template Conservation																																																																						.	.
Template Sequence		G	I	Y	N	S	P	Y	I	I	P	G	L	Q	A	V	T	L	G	G	T	F	Q	V	G	N	W	N	E	I	N	N	I	Q	D	H	N	T	I	W	E	G	C	C	R	L	E	P	T	L	K	D	A	K	I	V	G	E	Y	T	G	F	R	P	V	R	P	Q	V	.	.	R	L	E	R	E	Q	L	R	F	G
Template Known Secondary structure			T	T		S							S	S	S										T					S																	S	G	G	G	G	G															S	S		.	.									S	S
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		G	N	A	A	Q	T	L	H	P	I	A	.	.	G	Q	G	F	N	L	G	M	R	D	V	M	S	L	A	E	T	L	T	Q	A	Q	E	R	G	E
Query Conservation													.	.
Alig confidence													.	.
Template Conservation
Template Sequence		S	S	N	T	E	V	I	H	N	Y	G	H	G	G	Y	G	L	T	I	H	W	G	C	A	L	E	V	A	K	L	F	G	K	V	L	E	E	R	N
Template Known Secondary structure		S												G	G	G																							T	T
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions