Job Description P32709 Confidence 3.52% Date Thu Jan 5 11:50:27 GMT 2012 Rank 52 Aligned Residues 242 % Identity 13% Template d1v54a_ SCOP info Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Resolution 1.80

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	D	W	P	I	A	I	Y	L	F	L	I	G	I	S	A	G	L	V	T	L	A	V	L	L	R	R	F	Y	P	Q	A	G	G	A	D	S	T	L	L	R	T	T	L	I	V	G	P	G	A	V	I	L	G	L	L	I	L	V	F	H	L	T	R	P	W	T	F	W	K	L	M	F	H	Y	S	F	T	S	V
Query Conservation
Alig confidence												.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	G	H	P	E	V	Y	I	L	I	.	.	.	L	P	G	F	G	M	I	S	H	I	V	T	Y	Y	S	G	K	K	E	P	F	G	Y	M	G	M	V	W	A	M	M	S	I	G	F	L	G	F	I	V	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	H	H	M	F	T	V	G
Template Known Secondary structure												.	.	.															T	T		S	S		T	T															T	T	S		G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G		T	T	S
Template Predicted Secondary structure												.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.				.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.																			.	290	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	M	G	V	M	L	F	Q	L	Y	M	V	V	L	V	L	W	L	A	K	I	F	E	H	D	L	L	A	L	Q	Q	R	W	L	P	K	L	G	I	V	Q	K	V	L	S	L	L	T	P	V	H	R	G	L	E	T	L	M	L	V	L	A	V	L	L	G	A	Y	T	G	F	L	L	S	A	L	K	S	Y
Query Conservation
Alig confidence			.	.																																								.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		M	.	.	D	V	D	T	R	A	Y	F	T	S	A	T	M	I	I	A	I	P	T	G	V	K	V	F	S	W	L	A	T	L	H	G	G	N	I	K	W	S	P	.	.	.	.	.	.	.	.	.	.	A	M	M	W	A	L	G	F	I	F	L	F	T	V	G	G	L	T	G	I	V	L	A	N	S	S	L	D
Template Known Secondary structure			.	.															T																T	T								.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		297			.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.											.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		P	F	L	N	N	P	I	L	P	V	L	F	L	F	S	G	I	.	.	S	S	G	A	A	V	A	L	I	A	M	A	I	R	Q	R	S	N	P	H	S	T	E	A	Q	F	V	H	R	M	E	I	P	V	V	W	G	E	I	F	L	L	V	A	F	F	V	G	L	A	L	G	D	D	G	K	V	R	A	L	V
Query Conservation																			.	.
Alig confidence																			.	.																						.
Template Conservation																																										.
Template Sequence		I	V	L	H	D	T	Y	Y	V	V	A	H	F	H	Y	V	L	S	M	G	A	V	F	A	I	M	G	G	F	V	H	W	F	P	L	F	S	G	Y	T	.	L	N	D	T	W	A	K	I	H	F	A	I	M	F	V	G	V	N	M	T	F	F	P	Q	H	F	L	G	L	S	G	M	P	R	R	Y	S	D	Y
Template Known Secondary structure					T	T	B												T	T																			S	B		.																						T								T	T		B	T	T		S	S
Template Predicted Secondary structure																																										.
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.		.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L	G	G	G	F	W	T	W	W	F	W	L	G	V	A	G	L	G	L	I	V	P	M	L	L	K	P	W	V	N	R	S	S	G	I	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	D	A	Y	T	M	W	N	T	I	S	S	M	G	S	F	I	S	L	T	A	V	M	L	M	V	F	I	I	W	E	A	F	A	S	K	R	E
Template Known Secondary structure			G	G	G																																		B
Template Predicted Secondary structure
Template SS confidence
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions