Job Description P32709 Confidence 53.34% Date Thu Jan 5 11:50:27 GMT 2012 Rank 2 Aligned Residues 290 % Identity 11% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		V	W	D	W	P	I	A	I	Y	L	F	L	I	G	I	S	A	G	L	V	T	L	A	V	L	L	R	R	F	Y	P	.	.	Q	A	G	G	A	D	S	T	L	L	R	T	T	L	I	V	G	P	G	A	V	I	L	G	L	L	I	L	V	F	H	L	T	R	P	W	T	F	W	K	L	M	F	H	Y	S	F
Query Conservation																																	.	.
Alig confidence																																	.	.																		.	.	.
Template Conservation																																																				.	.	.
Template Sequence		N	L	G	W	A	F	I	L	F	G	T	V	F	V	F	F	I	V	V	I	A	A	S	K	F	G	T	I	R	L	G	R	I	D	E	A	P	E	F	R	T	V	S	W	I	S	X	X	F	A	.	.	.	A	G	X	G	I	G	L	X	F	Y	G	T	T	E	P	L	T	F	Y	R	N	G	V	P	G	H	D
Template Known Secondary structure			T																					S	G	G	G	G			S	S	S	T	T				S	S												.	.	.																					T			T	T	S
Template Predicted Secondary structure																																																				.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.				.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		91										.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.
Query Sequence		T	.	.	.	.	.	.	.	.	.	S	V	M	S	M	G	V	M	L	F	Q	L	Y	M	V	V	L	V	L	W	L	A	K	I	F	E	H	D	L	L	A	L	Q	Q	R	W	L	P	K	L	G	I	V	Q	K	V	L	S	L	L	T	P	V	H	R	G	L	E	T	L	M	L	V	L	A	V	L	L	G	A
Query Conservation			.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	H	N	V	G	V	A	X	S	T	T	X	F	H	W	T	L	H	P	W	A	I	Y	A	I	V	G	L	A	I	A	Y	S	T	F	R	V	G	R	K	Q	L	L	S	S	A	F	V	P	L	I	G	E	K	G	A	E	G	W	L	G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L
Template Known Secondary structure		S	S														S																		T	T	T	S				S	S	G	G	G	G	G	T	T	T	S		T	T	T			S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		Y	T	G	F	L	L	S	A	L	K	S	Y	P	F	L	N	N	P	I	L	P	V	L	F	L	F	S	G	I	S	S	G	A	A	V	A	L	I	A	M	A	I	R	Q	R	S	N	P	H	S	T	E	A	Q	F	V	H	R	M	E	I	P	V	V	W	G	E	I	F	L	L	V	A	F	F	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.																													.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.
Template Sequence		G	L	G	A	L	Q	I	G	A	G	L	S	A	A	N	I	I	E	S	D	W	T	I	V	G	I	V	S	V	L	T	L	A	F	I	F	S	A	I	S	.	.	.	.	.	.	.	G	V	G	K	G	I	Q	Y	L	S	N	A	N	X	V	L	A	A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I
Template Known Secondary structure													T	T	T	S																			T	T	G	G	G	T	T	.	.	.	.	.	.	.	S			S																								S
Template Predicted Secondary structure																																										.	.	.	.	.	.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.								.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.															.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	L	A	L	G	D	D	G	K	V	R	A	L	V	A	A	L	G	G	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	T	W	W	F	W	L	G	V	A	G	L	G	L	I	V	P	M	L	L	K	P	W	V	N	R	S	S	G	I	P	A	V	L	A	A	C	G	A	S	L	V	G	V
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation																																																										.	.
Template Sequence		L	N	L	L	P	G	S	I	G	N	Y	L	S	N	F	F	Q	X	A	G	R	T	A	X	S	A	D	G	T	A	G	E	W	L	G	S	W	T	I	F	Y	W	A	W	W	I	S	W	S	P	F	V	G	X	F	L	.	.	A	R	I	S	R	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G
Template Known Secondary structure																					T			T	T	T	T	S	S								T	T										T	T									.	.				T	T	T
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.			.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	L	R	F	F	I	L	Y	A	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	T	V	W	F	S	I	F	G	G	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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