Job Description P32709 Confidence 5.44% Date Thu Jan 5 11:50:27 GMT 2012 Rank 26 Aligned Residues 241 % Identity 10% Template c1m56G_ PDB info PDB header:oxidoreductase Chain: G: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobactor2 sphaeroides (wild type) Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	D	W	P	I	A	I	Y	L	F	L	I	G	I	S	A	G	L	V	T	L	A	V	L	L	R	R	F	Y	P	Q	A	G	G	A	D	S	T	L	L	R	T	T	L	I	V	G	P	G	A	V	I	L	G	L	L	I	L	V	F	H	L	T	R	P	W	T	F	W	K	L	M	F	H	Y	S	F	T	S	V
Query Conservation
Alig confidence																											.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	G	H	P	E	V	Y	I	I	V	L	P	A	F	G	I	V	S	H	V	I	A	T	F	A	.	.	.	.	K	K	P	I	F	G	Y	L	P	M	V	Y	A	M	V	A	I	G	V	L	G	F	V	V	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	H	H	M	Y	T	A	G
Template Known Secondary structure																											.	.	.	.	T	S			T	T															T	T	S		G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	G	T	T	S	S
Template Predicted Secondary structure																											.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.					.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.																			.	.	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	M	G	V	M	L	F	Q	L	Y	M	V	V	L	V	L	W	L	A	K	I	F	E	H	D	L	L	A	L	Q	Q	R	W	L	P	K	L	G	I	V	Q	K	V	L	S	L	L	T	P	V	H	R	G	L	E	T	L	M	L	V	L	A	V	L	L	G	A	Y	T	G	F	L	L	S	A	L	K	S	Y
Query Conservation
Alig confidence			.	.																																								.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		L	.	.	S	L	T	Q	Q	S	Y	F	M	M	A	T	M	V	I	A	V	P	T	G	I	K	I	F	S	W	I	A	T	M	W	G	G	S	I	E	L	K	T	.	.	.	.	.	.	.	.	.	.	P	M	L	W	A	L	G	F	L	F	L	F	T	V	G	G	V	T	G	I	V	L	S	Q	A	S	V	D
Template Known Secondary structure			.	.															T																T	T	S							.	.	.	.	.	.	.	.	.	.																								S
Template Predicted Secondary structure			.	.																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		340			.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.											380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		P	F	L	N	N	P	I	L	P	V	L	F	L	F	S	G	I	S	.	.	S	G	A	A	V	A	L	I	A	M	A	I	R	Q	R	S	N	P	H	S	T	E	A	Q	F	V	H	R	M	E	I	P	V	V	W	G	E	I	F	L	L	V	A	F	F	V	G	L	A	L	G	D	D	G	K	V	R	A	L	V
Query Conservation																				.	.
Alig confidence																				.	.																									.
Template Conservation																																														.
Template Sequence		R	Y	Y	H	D	T	Y	Y	V	V	A	H	F	H	Y	V	M	S	L	G	A	V	F	G	I	F	A	G	I	Y	F	W	I	G	K	M	S	G	R	Q	Y	P	E	W	.	A	G	K	L	H	F	W	M	M	F	V	G	A	N	L	T	F	F	P	Q	H	F	L	G	R	Q	G	M	P	R	R	Y	I	D	Y
Template Known Secondary structure					T	T	B													T	T																		S							.																		S								T	T		B	S	S		S	S
Template Predicted Secondary structure																																														.
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.		.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L	G	G	G	F	W	T	W	W	F	W	L	G	V	A	G	L	G	L	I	V	P	M	L	L	K	P	W	V	N	R	S	S	G	I	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	E	A	F	A	T	W	N	F	V	S	S	L	G	A	F	L	S	F	A	S	F	L	F	F	L	G	V	I	F	Y	T	L	T	R	G	A	R
Template Known Secondary structure			S	T	T
Template Predicted Secondary structure
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions