Secondary structure and disorder prediction |   |
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1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 |
Sequence |   |
M | L | T | L | A | R | Q | Q | Q | R | Q | N | I | R | W | L | L | C | L | S | V | L | M | L | L | A | L | L | L | S | L | C | A | G | E | Q | W | I | S | P | G | D | W | F | T | P | R | G | E | L | F | V | W | Q | I | R | L | P | R | T |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
? | ? | ? | ? | ? | ? | ? | ? | ? |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 |
Sequence |   |
L | A | V | L | L | V | G | A | A | L | A | I | S | G | A | V | M | Q | A | L | F | E | N | P | L | A | E | P | G | L | L | G | V | S | N | G | A | G | V | G | L | I | A | A | V | L | L | G | Q | G | Q | L | P | N | W | A | L | G | L | C |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 |
Sequence |   |
A | I | A | G | A | L | I | I | T | L | I | L | L | R | F | A | R | R | H | L | S | T | S | R | L | L | L | A | G | V | A | L | G | I | I | C | S | A | L | M | T | W | A | I | Y | F | S | T | S | V | D | L | R | Q | L | M | Y | W | M | M |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |   |
. | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 |
Sequence |   |
G | G | F | G | G | V | D | W | R | Q | S | W | L | M | L | A | L | I | P | V | L | L | W | I | C | C | Q | S | R | P | M | N | M | L | A | L | G | E | I | S | A | R | Q | L | G | L | P | L | W | F | W | R | N | V | L | V | A | A | T | G |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |   |
. | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 |
Sequence |   |
W | M | V | G | V | S | V | A | L | A | G | A | I | G | F | I | G | L | V | I | P | H | I | L | R | L | C | G | L | T | D | H | R | V | L | L | P | G | C | A | L | A | G | A | S | A | L | L | L | A | D | I | V | A | R | L | A | L | A | A |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . |
Sequence |   |
A | E | L | P | I | G | V | V | T | A | T | L | G | A | P | V | F | I | W | L | L | L | K | A | G | R |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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Confidence Key |
High(9) |   |
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Low (0) |
? | Disordered |
  | Alpha helix |
  | Beta strand |
Hover over an aligned region to see model and summary info
Please note, only up to the top 20 hits are modelled to reduce computer load
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1 |
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PDB 1l7v chain A
Region: 2 - 324 Aligned: 323 Modelled: 323 Confidence: 100.0% Identity: 97% Fold: ABC transporter involved in vitamin B12 uptake, BtuC Superfamily: ABC transporter involved in vitamin B12 uptake, BtuC Family: ABC transporter involved in vitamin B12 uptake, BtuC
Phyre2
2 |
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PDB 2nq2 chain A
Region: 14 - 323 Aligned: 303 Modelled: 308 Confidence: 100.0% Identity: 34% PDB header:metal transport Chain: A: PDB Molecule:hypothetical abc transporter permease protein
PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter.
Phyre2
3 |
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PDB 2b2h chain A
Region: 5 - 230 Aligned: 204 Modelled: 209 Confidence: 20.4% Identity: 14% PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter;
PDBTitle: ammonium transporter amt-1 from a. fulgidus (as)
Phyre2
4 |
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PDB 1q1h chain A
Region: 217 - 238 Aligned: 22 Modelled: 22 Confidence: 16.3% Identity: 27% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Transcription factor E/IIe-alpha, N-terminal domain
Phyre2
5 |
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PDB 1q1h chain A
Region: 217 - 238 Aligned: 22 Modelled: 22 Confidence: 16.3% Identity: 27% PDB header:transcription Chain: A: PDB Molecule:transcription factor e;
PDBTitle: an extended winged helix domain in general transcription2 factor e/iie alpha
Phyre2
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Detailed template information |   |
Binding site prediction |   |
Due to computational demand, binding site predictions are not run for batch jobs
If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
If you use the binding site
predictions from 3DLigandSite, please also cite: |
3DLigandSite: predicting ligand-binding sites using similar structures. |
Wass MN, Kelley LA and Sternberg
MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed] |
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