Job Description P30850 Confidence 100.00% Date Wed Jan 25 15:20:48 GMT 2012 Rank 6 Aligned Residues 390 % Identity 24% Template d2vnud4 SCOP info OB-fold Nucleic acid-binding proteins RNB domain-like Resolution 2.30

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		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.					.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.
Query SS confidence																									.	.	.	.
Query Sequence		P	W	W	V	T	L	A	R	H	N	L	E	K	E	A	P	D	G	V	A	T	E	M	.	.	.	.	L	D	E	G	L	V	R	E	D	L	T	A	L	D	F	V	T	I	D	S	A	S	T	E	D	M	D	D	A	L	F	A	K	A	L	P	D	D	K	L	Q	L	I	V	A	I	A	D	P	T	A	W	I
Query Conservation																									.	.	.	.
Alig confidence																									.	.	.	.
Template Conservation
Template Sequence		K	V	L	E	C	L	P	A	E	G	H	D	W	K	A	P	T	K	L	D	D	P	E	A	V	S	K	D	P	L	L	T	K	R	K	D	L	R	D	K	L	I	C	S	I	D	P	P	G	C	V	D	I	N	D	A	L	H	A	K	K	L	P	N	G	N	W	E	V	G	V	H	I	A	D	V	T	H	F	V
Template Known Secondary structure					T	T	S		T	T	G	G	G					S	S	T	T									G	G	G	G	G	S				T	T	S							S	S	S														T	T	S															S
Template Predicted Secondary structure
Template SS confidence
		498	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	G	S	K	L	D	K	A	A	K	I	R	A	F	T	N	Y	L	P	G	F	N	I	P	M	L	P	R	E	L	S	D	D	L	C	S	L	R	A	N	E	V	R	P	V	L	A	C	R	M	T	L	S	A	D	G	T	I	E	D	N	I	E	F	F	A	A	T	I	E	S	K	A	K	L	V	Y	D	Q
Query Conservation
Alig confidence																																																															.
Template Conservation																																																															.
Template Sequence		K	P	G	T	A	L	D	A	E	G	A	A	R	G	T	S	V	Y	L	V	D	K	R	I	D	X	L	P	X	L	L	G	T	D	L	C	S	L	K	P	Y	V	D	R	F	A	F	S	V	I	W	E	L	D	D	S	A	N	I	V	N	.	V	N	F	X	K	S	V	I	R	S	R	E	A	F	S	Y	E	Q
Template Known Secondary structure			T	T	S											B					S	S					S	S						T	T	T	S	S			B	T	S													T	T						.										B	S
Template Predicted Secondary structure																																																															.
Template SS confidence
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.		.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		V	S	D	W	L	E	N	T	G	D	W	Q	P	E	S	E	A	I	A	E	Q	V	R	L	L	A	Q	I	C	Q	R	R	G	E	W	R	H	N	H	A	L	V	F	K	D	R	P	D	Y	R	F	I	L	G	.	E	K	G	E	V	L	D	I	V	A	E	P	R	R	I	A	N	R	I	V	E	E	A	M	I
Query Conservation																																																								.
Alig confidence												.	.	.	.																																									.
Template Conservation												.	.	.	.
Template Sequence		A	Q	L	R	I	D	D	K	T	Q	.	.	.	.	N	D	E	L	T	X	G	X	R	A	L	L	K	L	S	V	K	L	K	Q	K	R	L	E	A	G	A	L	N	L	A	S	P	E	V	K	V	H	X	D	S	E	T	S	D	P	N	E	V	E	I	K	K	L	L	A	T	N	S	L	V	E	E	F	X	L
Template Known Secondary structure									T	T		.	.	.	.																									T	T															S	S	S	S
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		657	.	.	660	.	.	.	.	.	.					.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.		.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.					.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.																																																	.	.	.	.
Query SS confidence															.																																																	.	.	.	.
Query Sequence		A	A	N	I	C	A	A	R	V	L	R	D	K	.	L	G	F	G	I	Y	N	V	H	M	G	F	D	P	A	N	A	D	A	L	A	A	L	L	K	T	H	G	L	H	V	D	A	E	E	V	L	T	L	D	G	F	C	K	L	R	R	E	.	.	.	.	L	D	A	Q	P	T	G	F	L	D	S	R	I	R
Query Conservation															.																																																	.	.	.	.
Alig confidence															.																																	.	.															.	.	.	.
Template Conservation																																																.	.
Template Sequence		L	A	N	I	S	V	A	R	K	I	Y	D	A	F	P	Q	T	A	X	L	R	R	H	A	A	P	P	S	T	N	F	E	I	L	N	E	X	L	N	T	R	K	N	X	S	I	.	.	S	L	E	S	S	K	A	L	A	D	S	L	D	R	C	V	D	P	E	D	P	Y	F	N	T	L	V	R	I	X	S	T
Template Known Secondary structure																T	T	T						B					G	G	G	G												S				.	.			S											T			B	T	T	B	T	T
Template Predicted Secondary structure																																																.	.
Template SS confidence
		733	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.			.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810
		470	.	.	.	.	.	.	.							.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.							.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.																																													.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.																																													.	.	.	.	.	.
Query Sequence		R	F	Q	S	F	A	E	I	.	.	.	.	.	.	S	T	E	P	G	P	H	F	G	L	G	L	E	A	Y	A	T	W	T	S	P	I	R	K	Y	G	D	M	I	N	H	R	L	L	K	A	V	I	K	G	E	T	A	T	.	.	.	.	.	.	R	P	Q	D	E	I	T	V	Q	M	A	E	R	R	R	L
Query Conservation										.	.	.	.	.	.																																													.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.																																													.	.	.	.	.	.
Template Conservation
Template Sequence		R	C	X	X	A	A	Q	Y	F	Y	S	G	A	Y	S	Y	P	D	F	R	H	Y	G	L	A	V	D	I	Y	T	H	F	T	S	P	I	R	R	Y	C	D	V	V	A	H	R	Q	L	A	G	A	I	G	Y	E	P	L	S	L	T	H	R	D	K	N	K	X	D	X	I	C	R	N	I	N	R	K	H	R	N
Template Known Secondary structure		T	T	S								G	G	G	S		G	G	G	G		B	T	T	T	T	B	S						S		T	T	T	B														T	T	S	S				G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		811	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890
		538	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	M	A	E	R	D	V	G	D	W	L	Y	A	R	F	L	K	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q	F	A	G	R	A	S	I	E	Y	Y	V	G	Q	V	X	R	N
Template Known Secondary structure																				T
Template Predicted Secondary structure
Template SS confidence
		891	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions