 |
Job Description | P30850 | Confidence | 97.65% | Date | Wed Jan 25 15:20:48 GMT 2012 |
Rank | 43 | Aligned Residues | 68 |
% Identity | 19% | Template | d1sroa_ |
SCOP info | OB-fold
| Nucleic acid-binding proteins
| Cold shock DNA-binding domain-like
|
Resolution | UNK |
|
 |
  |   |
557 | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | A | G | T | D | T | R | F | A | A | E | I | V | D | I | S | R | G | G | M | R | V | R | L | V | D | N | G | A | I | A | F | I | P | A | P | F | L | H | A | V | R | D | E | L | V | C | S | Q | E | N | G | T | V | Q | I | K | G | E | T | V | Y | K | V | T | D | V | I | D | V | T | I | A | E | V | R | M | E | T | R |
Query Conservation |   |
  |   |
|   |   |   |   |
|   |
|   |
|   |   |
|   |   |   |
|   |   |
|   |
|   |   |   |   |   |
|
|   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|   |
|   |
|   |   |
|
|   |   |   |   |
Alig confidence |   |
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
Template Conservation |   |
  |   |
|   |   | . | . |
|   |
|   |
|   |   |
|   |   |   |
|   |   |
|   |
|   |   | . |   |   |   |
|   |
|   |   |   |   |
|
|   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   |
|
|   |   |
|   |   |   |
|
|   |
|
|   | . |   |   |
Template Sequence |   |
E | V | G | R | V | . |
. |
Y | T | G | K | V | T | R | I | V | D | F | G | A | F | V | A | I | G | G | . |
G | K | E | G | L | V | H | I | S | Q | I | A | D | K | R | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
E | K | V | T | D | Y | L | Q | M | G | Q | E | V | P | V | K | V | L | E | V | D | R | . |
Q | G |
Template Known Secondary structure |   |
| T | T | S |  | . | . |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |
| S | S | . | S |
|
|
| B |
|
| T | T | S | S |
| S | S |
|
| . | . | . | . | . | . | . | . | . | . | . | . | S |
|  |  |  |  |
|
| T | T |
|  |  |  |  |  |  |  |  |
|
| T | . | T |
|
Template Predicted Secondary structure |   |
|
|
|
|  | . | . |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
| . |
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
| . |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
4 | . | . | . | . | |
|
. | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | |
. | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | |
. | . |
  |
  |   |
637 | . | . | 640 |
Predicted Secondary structure |   |
 |  |  |  |
Query SS confidence |   |
|
|
|
|
Query Sequence |   |
S | I | I | A |
Query Conservation |   |
  |
|   |   |
Alig confidence |   |
|
|
|
|
Template Conservation |   |
|
|   |
|
Template Sequence |   |
R | I | R | L |
Template Known Secondary structure |   |
|
|  |  |
Template Predicted Secondary structure |   |
|  |  |  |
Template SS confidence |   |
|
|
|
|
  |   |
68 | . | 70 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|