Job Description P30850 Confidence 98.78% Date Wed Jan 25 15:20:48 GMT 2012 Rank 15 Aligned Residues 139 % Identity 13% Template c3h0gS_ PDB info PDB header:transcription Chain: S: PDB Molecule:dna-directed rna polymerase ii subunit rpb7; PDBTitle: rna polymerase ii from schizosaccharomyces pombe Resolution 3.65 Å

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		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.							.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.
Query Sequence		Y	A	T	W	T	S	P	I	R	K	Y	G	D	M	I	N	H	R	L	L	K	A	V	I	K	G	E	T	A	T	R	.	.	.	.	.	.	P	Q	D	E	I	T	V	Q	M	A	E	R	R	R	L	N	R	M	A	E	R	D	V	G	D	W	L	Y	A	R	F	L	K	D	K	A	G	T	D	T	R	F	A
Query Conservation																																	.	.	.	.	.	.
Alig confidence													.	.	.	.																	.	.	.	.	.	.																																								.	.
Template Conservation													.	.	.	.																																																														.	.
Template Sequence		P	S	Y	F	G	P	R	M	Q	D	Y	.	.	.	.	L	K	A	K	L	L	A	D	V	E	G	T	C	S	G	Q	Y	G	Y	I	I	C	V	L	D	S	N	T	I	D	I	D	K	G	R	V	V	P	G	Q	G	F	A	E	F	E	V	K	Y	R	A	V	L	W	R	P	F	R	G	E	V	.	.	V	D
Template Known Secondary structure		G	G	G		T	T	T					.	.	.	.										T	T				T	T	T								T	T	T	S										T	T	T																		T	T			.	.
Template Predicted Secondary structure													.	.	.	.																																																														.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.					.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.
		566	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	I	V	D	I	S	R	G	G	M	R	V	R	L	V	D	N	G	A	I	A	F	I	P	A	P	F	L	H	A	V	R	D	E	L	V	C	S	Q	E	N	G	T	V	Q	I	K	G	E	T	V	Y	K	V	T	D	V	I	D	V	T	I	A	E	V	R	M	E	T	R	S	I	I	A
Query Conservation
Alig confidence																	.	.																		.	.
Template Conservation																	.	.																		.	.
Template Sequence		A	I	V	T	T	V	N	K	M	G	F	F	A	N	I	.	.	G	P	L	N	V	F	V	S	S	H	L	V	P	P	D	M	K	.	.	F	D	P	T	A	N	P	P	N	Y	S	G	E	D	Q	V	I	E	K	G	S	N	V	R	L	K	I	V	G	T	R	T	D	A	T	E	I	F	A
Template Known Secondary structure									T	T						B	.	.	T	T	B						G	G	G	S		T	T			.	.		B	S	S	S	S	S		B			S	S	S					S	S													S	S	S
Template Predicted Secondary structure																	.	.																		.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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