Job Description P30850 Confidence 100.00% Date Wed Jan 25 15:20:48 GMT 2012 Rank 2 Aligned Residues 622 % Identity 21% Template c2wp8J_ PDB info PDB header:hydrolase Chain: J: PDB Molecule:exosome complex exonuclease dis3; PDBTitle: yeast rrp44 nuclease Resolution 3.00 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40		.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.								.									.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.								.									.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	Q	L	K	Q	Q	L	H	S	Q	T	P	R	A	E	G	V	V	K	A	T	E	K	G	F	.	.	G	F	L	E	V	D	A	.	Q	K	S	Y	F	I	P	P	.	P	Q	M	K	K	V	M	H	G	D	R	I	I	A	V	I	H	S	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																												.	.								.									.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.																.	.								.									.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.
Template Sequence		T	A	R	V	M	G	G	L	K	N	.	G	V	L	Y	Q	G	N	I	Q	I	S	E	Y	N	F	L	E	G	S	V	S	L	P	R	F	S	K	P	V	L	I	V	G	Q	K	N	L	N	R	A	F	N	G	D	Q	V	I	V	E	L	L	P	Q	S	E	W	K	A	P	S	S	I	V	L	D	S	E	H	F
Template Known Secondary structure											T	.	T	S	S									S	S	B	T	T							T	T		S	S						S					T	T			T	T										G	G	G		B				S			B		G	G	G	S
Template Predicted Secondary structure												.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
																																				69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.									.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	E	S	A	E	P	E	E	L	V	E	P	F	L	T	R	F	V	G	K	V	Q	.	.	.	.	.	.	.	.	G	K	N	D	R	L	A	I	V	P	D	H	P	L	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	V	N	D	N	P	D	I	E	N	T	T	V	I	S	D	K	Q	R	R	L	L	A	K	D	A	M	I	A	Q	R	S	K	K	I	Q	P	T	A	K	V	V	Y	I	Q	R	R	S	W	R	Q	Y	V	G	Q	L	A	P	S	S	V	D	P	Q	S	S	S	T	Q	N	V	F	V	I	L	M	D	K	C	L
Template Known Secondary structure		S	T	T																														S			B		B																				G	G	G			T	T			S									S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																																																				.												.	.
Query SS confidence																																																																				.												.	.
Query Sequence		K	D	A	I	P	C	R	A	A	R	G	L	N	H	E	F	K	E	G	D	W	A	V	A	E	M	R	R	H	P	L	K	G	D	R	S	F	Y	A	E	L	T	Q	Y	I	T	F	G	D	D	H	F	V	P	W	W	V	T	L	A	R	H	N	L	E	K	.	E	A	P	D	G	V	A	T	E	M	L	.	.
Query Conservation																																																																				.												.	.
Alig confidence													.	.	.	.																	.																																			.												.	.
Template Conservation													.	.	.	.																	.
Template Sequence		P	K	V	R	I	R	T	R	R	A	A	.	.	.	.	E	L	L	D	K	R	I	V	I	S	I	D	S	W	P	T	.	T	H	K	Y	P	L	G	H	F	V	R	D	L	G	T	I	E	S	A	Q	A	E	T	E	A	L	L	L	E	H	D	V	E	Y	R	P	F	S	K	K	V	L	E	C	L	P	A	E
Template Known Secondary structure									T	T	T	T	.	.	.	.	G	G	G	G												T	.	T		S	S												S	S		S											T	T				S								T	T	S		T	T
Template Predicted Secondary structure													.	.	.	.																	.
Template SS confidence
		432	.	.	.	.	.	.	.	440	.	.					.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.		.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
																					184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	G	L	V	R	E	D	L	T	A	L	D	F	V	T	I	D	S	A	S	T	E	D	M	D	D	A	L	F	A	K	A	L	P	D	D	K	L	Q	L	I	V	A	I	A	D	P	T	A	W	I	A	E	G	S	K	L	D	K	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	H	D	W	K	A	P	T	K	L	D	D	P	E	A	V	S	K	D	P	L	L	T	K	R	K	D	L	R	D	K	L	I	C	S	I	D	P	P	G	C	V	D	I	N	D	A	L	H	A	K	K	L	P	N	G	N	W	E	V	G	V	H	I	A	D	V	T	H	F	V	K	P	G	T	A	L	D	A	E
Template Known Secondary structure		G	G	G					S	S	T	T									G	G	G	G	G					T	T	S								T	T		S												T	T	S															S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		507	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	I	R	A	F	T	N	Y	L	P	G	F	N	I	P	M	L	P	R	E	L	S	D	D	L	C	S	L	R	A	N	E	V	R	P	V	L	A	C	R	M	T	L	S	A	D	G	T	I	E	D	N	I	E	F	F	A	A	T	I	E	S	K	A	K	L	V	Y	D	Q	V	S	D	W	L	E	N	T	G
Query Conservation
Alig confidence																																																						.
Template Conservation																																																						.
Template Sequence		G	A	A	R	G	T	S	V	Y	L	V	D	K	R	I	D	M	L	P	M	L	L	G	T	D	L	C	S	L	K	P	Y	V	D	R	F	A	F	S	V	I	W	E	L	D	D	S	A	N	I	V	N	.	V	N	F	M	K	S	V	I	R	S	R	E	A	F	S	Y	E	Q	A	Q	L	R	I	D	D	K	T
Template Known Secondary structure							B					T	T					S	S						T	T	T	S	S			B	T	S													T	T	S					.										B	S															T	T
Template Predicted Secondary structure																																																						.
Template SS confidence
		587	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.		.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		D	W	Q	P	E	S	E	A	I	A	E	Q	V	R	L	L	A	Q	I	C	Q	R	R	G	E	W	R	H	N	H	A	L	V	F	K	D	R	P	D	Y	R	F	I	L	G	.	E	K	G	E	V	L	D	I	V	A	E	P	R	R	I	A	N	R	I	V	E	E	A	M	I	A	A	N	I	C	A	A	R	V
Query Conservation																																															.
Alig confidence					.	.	.	.																																							.
Template Conservation					.	.	.	.
Template Sequence		Q	N	D	.	.	.	.	E	L	T	M	G	M	R	A	L	L	K	L	S	V	K	L	K	Q	K	R	L	E	A	G	A	L	N	L	A	S	P	E	V	K	V	H	M	D	S	E	T	S	D	P	N	E	V	E	I	K	K	L	L	A	T	N	S	L	V	E	E	F	M	L	L	A	N	I	S	V	A	R	K
Template Known Secondary structure					.	.	.	.																						T	T	T						S					T	T	S			T	T						S	S
Template Predicted Secondary structure					.	.	.	.
Template SS confidence
		666	.	.					.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.
		404	.	.	.		.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.		.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.		.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure						.																												.																							.																						.	.	.
Query SS confidence						.																												.																							.																						.	.	.
Query Sequence		L	R	D	K	.	L	G	F	G	I	Y	N	V	H	M	G	F	D	P	A	N	A	D	A	L	A	A	L	L	K	T	H	.	G	L	H	V	D	A	E	E	V	L	T	L	D	G	F	C	K	L	R	R	E	L	.	D	A	Q	P	T	G	F	L	D	S	R	I	R	R	F	Q	S	F	A	E	I	.	.	.
Query Conservation						.																												.																							.																						.	.	.
Alig confidence						.																												.																							.																						.	.	.
Template Conservation
Template Sequence		I	Y	D	A	F	P	Q	T	A	M	L	R	R	H	A	A	P	P	S	T	N	F	E	I	L	N	E	M	L	N	T	R	K	N	M	S	I	S	L	E	S	S	K	A	L	A	D	S	L	D	R	C	V	D	P	E	D	P	Y	F	N	T	L	V	R	I	M	S	T	R	C	M	M	A	A	Q	Y	F	Y	S
Template Known Secondary structure							T	T	T						B					G	G	G	G												S						S	S														S	S		T	T											T	T	S								G
Template Predicted Secondary structure
Template SS confidence
		742	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.
					478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.							.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																															.	.	.	.	.	.
Query SS confidence		.	.	.																																															.	.	.	.	.	.
Query Sequence		.	.	.	S	T	E	P	G	P	H	F	G	L	G	L	E	A	Y	A	T	W	T	S	P	I	R	K	Y	G	D	M	I	N	H	R	L	L	K	A	V	I	K	G	E	T	A	T	R	P	.	.	.	.	.	.	Q	D	E	I	T	V	Q	M	A	E	R	R	R	L	N	R	M	A	E	R	D	V	G	D	W
Query Conservation		.	.	.																																															.	.	.	.	.	.
Alig confidence		.	.	.																																															.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	Y	S	Y	P	D	F	R	H	Y	G	L	A	V	D	I	Y	T	H	F	T	S	P	I	R	R	Y	C	D	V	V	A	H	R	Q	L	A	G	A	I	G	Y	E	P	L	S	L	T	H	R	D	K	N	K	M	D	M	I	C	R	N	I	N	R	K	H	R	N	A	Q	F	A	G	R	A	S	I	E	Y
Template Known Secondary structure		G	G	S		G	G	G	S		B	T	T	T	T	B	S	S					S		T	T	T	B														T	T	S	S				G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		822	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.
		549	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.			.	.	.	600	.	.	.	.	.	.	.	.	.	610				.	.	.	.	.	.	.	.	.	620	.	.	.
Predicted Secondary structure																																																		.	.															.	.	.
Query SS confidence																																																		.	.															.	.	.
Query Sequence		L	Y	A	R	F	L	K	D	K	A	G	T	D	T	R	F	A	A	E	I	V	D	I	S	R	G	G	M	R	V	R	L	V	D	N	G	A	I	A	F	I	P	A	P	F	L	H	A	.	.	V	R	D	E	L	V	C	S	Q	E	N	G	T	V	.	.	.	Q	I	K	G	E	T	V	Y	K	V	T	D	V
Query Conservation																																																		.	.															.	.	.
Alig confidence											.				.	.																																		.	.															.	.	.
Template Conservation											.				.	.
Template Sequence		Y	V	G	Q	V	M	R	N	N	.	E	S	T	.	.	E	T	G	Y	V	I	K	V	F	N	N	G	I	V	V	L	V	P	K	F	G	V	E	G	L	I	R	L	D	N	L	T	E	D	P	N	S	A	A	F	D	E	V	E	Y	K	L	T	F	V	P	T	N	S	D	K	P	R	D	V	Y	V	F	D	K
Template Known Secondary structure										T	.	T			.	.										S	S							T	T	T								G	G	G	T		S		G	G	G					T	T	T	T							T	T			S						T	T
Template Predicted Secondary structure											.				.	.
Template SS confidence
		902	.	.	.	.	.	.	.	910		.	.	.			.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.
		624	.	.	.	.	.	630	.		.	.	.	.	.	.	.	.	640	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		I	D	V	T	I	A	E	V	.	R	M	E	T	R	S	I	I	A	R	P	V
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		V	E	V	Q	V	R	S	V	M	D	P	I	T	S	K	R	K	A	E	L	L
Template Known Secondary structure												S	S	S
Template Predicted Secondary structure
Template SS confidence
		979	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.