Job Description P30850 Confidence 100.00% Date Wed Jan 25 15:20:48 GMT 2012 Rank 3 Aligned Residues 615 % Identity 20% Template c2vnuD_ PDB info PDB header:hydrolase/rna Chain: D: PDB Molecule:exosome complex exonuclease rrp44; PDBTitle: crystal structure of sc rrp44 Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40		.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																		.	.								.									.																							.	.	.	.	.	.	.
Query SS confidence																																		.	.								.									.																							.	.	.	.	.	.	.
Query Sequence		F	Q	D	N	P	L	L	A	Q	L	K	Q	Q	L	H	S	Q	T	P	R	A	E	G	V	V	K	A	T	E	K	G	F	.	.	G	F	L	E	V	D	A	.	Q	K	S	Y	F	I	P	P	.	P	Q	M	K	K	V	M	H	G	D	R	I	I	A	V	I	H	S	E	K	E	R	.	.	.	.	.	.	.
Query Conservation																																		.	.								.									.																							.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.																.	.								.									.																							.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.
Template Sequence		Y	S	T	A	R	V	X	G	G	L	K	N	.	.	.	.	.	G	V	L	Y	Q	G	N	I	Q	I	S	E	Y	N	F	L	E	G	S	V	S	L	P	R	F	S	K	P	V	L	I	V	G	Q	K	N	L	N	R	A	F	N	G	D	Q	V	I	V	E	L	L	P	Q	S	E	W	K	A	P	S	S	I	V
Template Known Secondary structure														.	.	.	.	.	T	S										S	S	B	T	T							S	S	S	S	S						S					T	T			T	T										G	G	G		B				S	S
Template Predicted Secondary structure														.	.	.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270						.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
											71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.									.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	E	S	A	E	P	E	E	L	V	E	P	F	L	T	R	F	V	G	K	V	Q	.	.	.	.	.	.	.	.	G	K	N	D	R	L	A	I	V	P	D	H	P	L	L	K	D	A	I	P	C	R	A	A	R	G	L	N	H	E	F	K	E	G	D	W	A	V	A	E	M	R
Query Conservation		.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.																											.	.	.	.
Template Conservation																																																																		.	.	.	.
Template Sequence		L	D	S	E	H	F	D	I	Q	P	T	A	K	V	V	Y	I	Q	R	R	S	W	R	Q	Y	V	G	Q	L	A	P	S	S	V	D	P	Q	S	S	S	T	Q	N	V	F	V	I	L	X	D	K	C	L	P	K	V	R	I	R	T	R	R	A	A	.	.	.	.	E	L	L	D	K	R	I	V	I	S	I	D
Template Known Secondary structure		B		T	T	T				B		B																				G	G	G			T	T			S									S	S	T	T	S								T	T	G	G	.	.	.	.	G	G	T	T
Template Predicted Secondary structure																																																																		.	.	.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.					.	.	400	.	.	.	.	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.																						.	.	.	.	.	.	190	.
Predicted Secondary structure																																										.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	H	P	L	K	G	D	R	S	F	Y	A	E	L	T	Q	Y	I	T	F	G	D	D	H	F	V	P	W	W	V	T	L	A	R	H	N	L	E	K	E	.	A	P	D	G	V	A	T	E	M	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	G	L	V	R	E	D
Query Conservation																																										.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.																																				.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.
Template Sequence		S	W	P	T	.	T	H	K	Y	P	L	G	H	F	V	R	D	L	G	T	I	E	S	A	Q	A	E	T	E	A	L	L	L	E	H	D	V	E	Y	R	P	F	S	K	K	V	L	E	C	L	P	A	E	G	H	D	W	K	A	P	T	K	L	D	D	P	E	A	V	S	K	D	P	L	L	T	K	R	K	D
Template Known Secondary structure					T	.	T		S	S												S	S		S											T	T				S								T	T	S		T	T	G	G	G					S	S	T	T									G	G	G	G	G	S
Template Predicted Secondary structure						.
Template SS confidence
		455	.	.	.		.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	A	L	D	F	V	T	I	D	S	A	S	T	E	D	M	D	D	A	L	F	A	K	A	L	P	D	D	K	L	Q	L	I	V	A	I	A	D	P	T	A	W	I	A	E	G	S	K	L	D	K	A	A	K	I	R	A	F	T	N	Y	L	P	G	F	N	I	P	M	L	P	R	E	L	S	D	D	L	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	D	K	L	I	C	S	I	D	P	P	G	C	V	D	I	N	D	A	L	H	A	K	K	L	P	N	G	N	W	E	V	G	V	H	I	A	D	V	T	H	F	V	K	P	G	T	A	L	D	A	E	G	A	A	R	G	T	S	V	Y	L	V	D	K	R	I	D	X	L	P	X	L	L	G	T	D	L	C
Template Known Secondary structure			T	T	S							S	S	S														T	T	S															S		T	T	S											B					S	S					S	S						T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		534	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	R	A	N	E	V	R	P	V	L	A	C	R	M	T	L	S	A	D	G	T	I	E	D	N	I	E	F	F	A	A	T	I	E	S	K	A	K	L	V	Y	D	Q	V	S	D	W	L	E	N	T	G	D	W	Q	P	E	S	E	A	I	A	E	Q	V	R	L	L	A	Q	I	C	Q	R	R	G	E	W	R
Query Conservation
Alig confidence																											.																															.	.	.	.
Template Conservation																											.																															.	.	.	.
Template Sequence		S	L	K	P	Y	V	D	R	F	A	F	S	V	I	W	E	L	D	D	S	A	N	I	V	N	.	V	N	F	X	K	S	V	I	R	S	R	E	A	F	S	Y	E	Q	A	Q	L	R	I	D	D	K	T	Q	N	D	.	.	.	.	E	L	T	X	G	X	R	A	L	L	K	L	S	V	K	L	K	Q	K	R
Template Known Secondary structure		S			B	T	S													T	T						.										B	S															T	T				.	.	.	.
Template Predicted Secondary structure																											.																															.	.	.	.
Template SS confidence
		614	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.		.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.					.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.		.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.																																							.
Query SS confidence																				.																																							.
Query Sequence		H	N	H	A	L	V	F	K	D	R	P	D	Y	R	F	I	L	G	.	E	K	G	E	V	L	D	I	V	A	E	P	R	R	I	A	N	R	I	V	E	E	A	M	I	A	A	N	I	C	A	A	R	V	L	R	D	K	.	L	G	F	G	I	Y	N	V	H	M	G	F	D	P	A	N	A	D	A	L	A	A
Query Conservation																				.																																							.
Alig confidence																				.																																							.
Template Conservation
Template Sequence		L	E	A	G	A	L	N	L	A	S	P	E	V	K	V	H	X	D	S	E	T	S	D	P	N	E	V	E	I	K	K	L	L	A	T	N	S	L	V	E	E	F	X	L	L	A	N	I	S	V	A	R	K	I	Y	D	A	F	P	Q	T	A	X	L	R	R	H	A	A	P	P	S	T	N	F	E	I	L	N	E
Template Known Secondary structure				T	T															S	S	S	S																																					T	T	T						B					G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		689	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.
		430	.		.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.		.	.	.	.	.	.	.	470	.	.	.	.	.	.	.							.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure				.																																.																.	.	.	.	.	.
Query SS confidence				.																																.																.	.	.	.	.	.
Query Sequence		L	L	.	K	T	H	G	L	H	V	D	A	E	E	V	L	T	L	D	G	F	C	K	L	R	R	E	L	D	A	Q	P	T	G	.	F	L	D	S	R	I	R	R	F	Q	S	F	A	E	I	.	.	.	.	.	.	S	T	E	P	G	P	H	F	G	L	G	L	E	A	Y	A	T	W	T	S	P	I	R	K
Query Conservation				.																																.																.	.	.	.	.	.
Alig confidence				.																																.																.	.	.	.	.	.
Template Conservation
Template Sequence		X	L	N	T	R	K	N	X	S	I	S	L	E	S	S	K	A	L	A	D	S	L	D	R	C	V	D	P	E	D	P	Y	F	N	T	L	V	R	I	X	S	T	R	C	X	X	A	A	Q	Y	F	Y	S	G	A	Y	S	Y	P	D	F	R	H	Y	G	L	A	V	D	I	Y	T	H	F	T	S	P	I	R	R
Template Known Secondary structure								S						S											T			B	T	T	B	T	T											T	T	S								G	G	G	S		G	G	G	G		B	T	T	T	T	B	S						S		T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		769	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.
		502	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520							.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.
Query Sequence		Y	G	D	M	I	N	H	R	L	L	K	A	V	I	K	G	E	T	A	.	.	.	.	.	.	T	R	P	Q	D	E	I	T	V	Q	M	A	E	R	R	R	L	N	R	M	A	E	R	D	V	G	D	W	L	Y	A	R	F	L	K	D	K	A	G	T	D	T	R	F	A	A	E	I	V	D	I	S	R	G	G
Query Conservation																					.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.																																									.	.	.
Template Conservation																																																																			.	.	.
Template Sequence		Y	C	D	V	V	A	H	R	Q	L	A	G	A	I	G	Y	E	P	L	S	L	T	H	R	D	K	N	K	X	D	X	I	C	R	N	I	N	R	K	H	R	N	A	Q	F	A	G	R	A	S	I	E	Y	Y	V	G	Q	V	X	R	N	N	E	S	T	.	.	.	E	T	G	Y	V	I	K	V	F	N	N	G
Template Known Secondary structure															T	T	S	S				G	G	G	G																																					T			S		.	.	.										T	T
Template Predicted Secondary structure																																																																			.	.	.
Template SS confidence
		849	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.				.	.	.	.	.	.	920	.	.	.	.	.
		576	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610						.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.
Query SS confidence																																					.	.	.	.	.
Query Sequence		M	R	V	R	L	V	D	N	G	A	I	A	F	I	P	A	P	F	L	H	A	V	R	D	E	L	V	C	S	Q	E	N	G	T	V	.	.	.	.	.	Q	I	K	G	E	T	V	Y	K	V	T	D	V	I	D	V	T	I	A	E	V	R	M	E
Query Conservation																																					.	.	.	.	.
Alig confidence																																					.	.	.	.	.
Template Conservation
Template Sequence		I	V	V	L	V	P	K	F	G	V	E	G	L	I	R	L	D	N	L	T	E	D	P	N	S	A	A	F	D	E	V	E	Y	K	L	T	F	V	P	T	N	S	D	K	P	R	D	V	Y	V	F	D	K	V	E	V	Q	V	R	K	R	K	A	E
Template Known Secondary structure							T	T	T	T												S		G	G	G					T	T	T	T							T	T		S	S						T	T
Template Predicted Secondary structure
Template SS confidence
		926	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.