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Job DescriptionP30850
Confidence100.00%DateWed Jan 25 15:20:48 GMT 2012
Rank1Aligned Residues643
% Identity99%Templatec2ix1A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:exoribonuclease 2; PDBTitle: rnase ii d209n mutant
Resolution2.74 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVE
Query Conservation 
         

  
        
 
    





  
   



     
 
  

 
 
 
        
 

 


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Template Conservation 
     
   

  
        
 
    





  
   



     
 
  

 
 
 
     
  
 

 


Template Sequence  MLEADPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVE
Template Known Secondary structure 




TTTTS


SSS
TT
TT

TT

SSS
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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  PFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVP
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Template Conservation 
     

 
          
 
 
    
                 
 
 
   
        
 
   

   
    
Template Sequence  PFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVP
Template Known Secondary structure 
S
STTSSTT




TT





TT

GGGT
SS

TT
TT
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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  WWVTLARHNLEKEAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK
Query Conservation     

    
   
   
          
 


     


   


 






    
   
 






  
   
 
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Template Conservation     

    
   
      
       
 


     


   
 
 






    
   
 






  
   
 
Template Sequence  WWVTLARHNLEKEAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMNDALFAKALPDDKLQLIVAIADPTAWIAEGSK
Template Known Secondary structure  TT


S











S



TTS

B
TT




TTT
GGGTS
TTS
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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   241........250.........260.........270.........280.........290.........300.........310.........320
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Query Sequence  LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWL
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Template Conservation 

 

  

 




  
 



  

   


 
   
 
 
    

  
 
        


 
   


  
   
Template Sequence  LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWL
Template Known Secondary structure  S
B
TT
SS
TTTSS

BTS
TT

B
S

BS
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   241........250.........260.........270.........280.........290.........300.........310.........320
 
   321........330.........340.........350.........360.........370.........380.........390.........400
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Query Sequence  ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICA
Query Conservation                  
  
  

  

  
   

     

  
 


      
       
  



 




  
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Template Conservation                  
  
  

  

  
   
      

    

       
       
  



 




  
Template Sequence  ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICA
Template Known Secondary structure  TT
SS


SSS







TTS



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   321........330.........340.........350.........360.........370.........380.........390.........400
 
   401........410.........420.........430.........440.........450.........460.........470.........480
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Query Sequence  ARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTE
Query Conservation 
  
       
 
 
  
       
       
                            
   
 
 
  
 

  
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Template Conservation 
  
       
 
 
  
       
       
                            
   
 
 
  
 

  
Template Sequence  ARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTE
Template Known Secondary structure  TS


B
SB
GGGTT



TTGGGSTSSSSGGGB


SS
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   401........410.........420.........430.........440.........450.........460.........470.........480
 
   481........490.........500.........510.........520.........530.........540.........550.........560
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Query Sequence  PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGT
Query Conservation     



    










 





 
   
           
          
  


          
    
 
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Template Conservation     



    










 





 
   
           
       
  
  


          
    
 
Template Sequence  PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGT
Template Known Secondary structure 


BTTTTBS




S
TTSBT






TTGGGTTS
Template Predicted Secondary structure 

























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   481........490.........500.........510.........520.........530.........540.........550.........560
 
   561........570.........580.........590.........600.........610.........620.........630.........640
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Query Sequence  DTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA
Query Conservation     
 
 
  
   
  
 
     

 
    
                         


 
 
 
  

     
  
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Template Conservation     
 
 
  
   
  
 
    


 
    
                         


 
 
 
  

     
 
Template Sequence  DTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA
Template Known Secondary structure 


TTTTT

GGGG
S
GGGTTTTTTTT
GGGT
Template Predicted Secondary structure 






























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   561........570.........580.........590.........600.........610.........620.........630.........640
 
   641..
Predicted Secondary structure 
Query SS confidence 


Query Sequence  RPV
Query Conservation    
Alig confidence 


Template Conservation    
Template Sequence  RPV
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 


   641..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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