Job Description P30850 Confidence 92.94% Date Wed Jan 25 15:20:48 GMT 2012 Rank 79 Aligned Residues 70 % Identity 31% Template c1xpuB_ PDB info PDB header:transcription/rna Chain: B: PDB Molecule:rho transcription termination factor; PDBTitle: structural mechanism of inhibition of the rho transcription2 termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-3 dihydrobicyclomycin (fpdb) Resolution 3.05 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40					.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																						.																			.	.			.	.	.	.														.	.
Query SS confidence																						.																			.	.			.	.	.	.														.	.
Query Sequence		M	F	Q	D	N	P	L	L	A	Q	L	K	Q	Q	L	H	S	Q	T	P	.	R	A	E	G	V	V	K	A	T	E	K	G	F	G	F	L	E	V	.	.	D	A	.	.	.	.	Q	K	S	Y	F	I	P	P	P	Q	M	K	K	.	.	V	M	H	G	D	R	I	I	A	V	I	H	S	E	K	E	R
Query Conservation																						.																			.	.			.	.	.	.														.	.
Alig confidence																						.																			.	.			.	.	.	.														.	.
Template Conservation
Template Sequence		M	R	K	Q	D	I	I	F	A	I	L	K	Q	H	A	K	S	G	E	D	I	F	G	D	G	V	L	E	I	L	Q	D	G	F	G	F	L	R	S	A	D	S	S	Y	L	A	G	P	D	D	I	Y	V	S	P	S	Q	I	R	R	F	N	L	R	T	G	D	T	I	S	G	K	I	R	P	P	K	E	G
Template Known Secondary structure		S												T	T	T	T	S	T	T												T	T	S							G	G	G	T	T				T	T													T			T	T												S	S
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions