Job Description P69874 Confidence 100.00% Date Thu Jan 5 12:12:15 GMT 2012 Rank 1 Aligned Residues 355 % Identity 37% Template c2yyzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sugar abc transporter, atp-binding protein; PDBTitle: crystal structure of sugar abc transporter, atp-binding protein Resolution 2.11 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	V	Q	L	A	G	I	R	K	C	F	D	G	K	E	V	I	P	Q	L	D	L	T	I	N	N	G	E	F	L	T	L	L	G	P	S	G	C	G	K	T	T	V	L	R	L	I	A	G	L	E	T	V	D	S	G	R	I	M	L	D	N	E	D	I	T	H	V	P	A	E	N	R	Y	V	N	T	V	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	S	I	R	V	V	N	L	K	K	Y	F	G	K	V	K	A	V	D	G	V	S	F	E	V	K	D	G	E	F	V	A	L	L	G	P	S	G	C	G	K	T	T	T	L	L	M	L	A	G	I	Y	K	P	T	S	G	E	I	Y	F	D	D	V	L	V	N	D	I	P	P	K	Y	R	E	V	G	M	V	F
Template Known Secondary structure														T	T													T	T								S	T	T	S	S										T	S	S			S							T	T				T	T	S		G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	Y	A	L	F	P	H	M	T	V	F	E	N	V	A	F	G	L	R	M	Q	K	T	P	A	A	E	I	T	P	R	V	M	E	A	L	R	M	V	Q	L	E	T	F	A	Q	R	K	P	H	Q	L	S	G	G	Q	Q	Q	R	V	A	I	A	R	A	V	V	N	K	P	R	L	L	L	L	D	E	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	N	Y	A	L	Y	P	H	M	T	V	F	E	N	I	A	F	P	L	R	A	R	R	I	S	K	D	E	V	E	K	R	V	V	E	I	A	R	K	L	L	I	D	N	L	L	D	R	K	P	T	Q	L	S	G	G	Q	Q	Q	R	V	A	L	A	R	A	L	V	K	Q	P	K	V	L	L	F	D	E	P	L
Template Known Secondary structure		S	S					T	T	S								G	G	G	S	S	S		S					T	T										T	T		G	G	G	T	T	S		G	G	G	S															T	T			S						S	T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	L	D	Y	K	L	R	K	Q	M	Q	N	E	L	K	A	L	Q	R	K	L	G	I	T	F	V	F	V	T	H	D	Q	E	E	A	L	T	M	S	D	R	I	V	V	M	R	D	G	R	I	E	Q	D	G	T	P	R	E	I	Y	E	E	P	K	N	L	F	V	A	G	F	I	G	E	I	N	M	F	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	N	L	D	A	N	L	R	M	I	M	R	A	E	I	K	H	L	Q	Q	E	L	G	I	T	S	V	Y	V	T	H	D	Q	A	E	A	M	T	M	A	S	R	I	A	V	F	N	Q	G	K	L	V	Q	Y	G	T	P	D	E	V	Y	D	S	P	K	N	M	F	V	A	S	F	I	G	N	P	P	T	N	F
Template Known Secondary structure		T	T	S																												S										S							T	T														S		S	B							S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	V	I	E	R	L	D	E	Q	R	V	R	A	N	V	E	G	R	E	C	N	I	Y	V	N	F	A	V	E	P	G	Q	K	L	H	V	L	L	R	P	E	D	L	R	V	E	E	I	N	D	D	N	H	A	E	G	L	I	G	Y	V	R	E	R	N	Y	K	G	M	T	L	E	S	V	V	E	L	E	N
Query Conservation
Alig confidence																																																					.	.	.
Template Conservation																																																					.	.	.
Template Sequence		L	R	D	F	S	V	S	V	E	N	K	Q	T	I	L	K	R	D	D	V	I	I	K	L	P	E	P	V	D	V	K	L	K	E	V	V	V	G	I	R	P	E	H	C	R	I	S	R	E	R	V	.	.	.	E	N	S	I	P	G	V	V	Y	V	V	E	P	L	G	R	D	I	I	V	N	V	K	T	E	K
Template Known Secondary structure											T	T							T	T						S	S							S								G	G	G					S	S			.	.	.	T	T													T	T									T	T
Template Predicted Secondary structure																																																					.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.				.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	M	V	M	V	S	E	F	F	N	E	D	D	P	D	F	D	H	S	L	D	Q	K	M	A	I	N	W	V	E	S	W	E	V	V	L	A	D	E	E	H	K
Query Conservation
Alig confidence										.	.	.	.	.
Template Conservation										.	.	.	.	.
Template Sequence		G	E	I	I	K	V	F	G	.	.	.	.	.	D	T	G	K	A	P	Q	P	G	E	N	V	F	L	V	P	D	L	R	K	I	H	L	F	N	P	E	T	E	E
Template Known Secondary structure		S								.	.	.	.	.		S	S					T	T									T	T	T						T	T	T		B
Template Predicted Secondary structure										.	.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.						.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions