Job Description P69874 Confidence 96.50% Date Thu Jan 5 12:12:15 GMT 2012 Rank 284 Aligned Residues 127 % Identity 17% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	T	I	N	N	G	E	F	L	T	L	L	G	P	S	G	C	G	K	T	T	V	L	R	L	I	A	G	L	E	T	V	D	S	G	R	I	M	L	D	N	E	D	I	T	H	V	P	A	E	N	R	Y	V	N	T	V	F	Q	S	Y	A	L	F	P	H	M	T	V	F	E	N	V	A	F	G	L	R	M
Query Conservation
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	W	T	P	T	K	G	N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S	S								S	T	T	S	S															T	T											S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		Q	K	T	P	A	A	E	I	T	P	R	V	M	E	A	L	R	M	V	Q	L	E	T	F	A	Q	R	K	P	H	Q	L	S	G	G	Q	Q	Q	R	V	A	I	A	R	A	V	V	N	K	P	R	L	L	L	L	D	E	S	L	.	S	A	L	D	Y	K	L	R	K	Q	M	Q	N	E	L	K	A	L	Q	R
Query Conservation																																																													.
Alig confidence		.	.	.	.	.	.																																								.	.													.																			.	.
Template Conservation		.	.	.	.	.	.																																								.	.																																.	.
Template Sequence		.	.	.	.	.	.	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y	T	E	M	D	P	V	I	I	A	S	E	G	V	E	K	F	K	N	.	.	E	N	F	E	I	I	I	V	D	T	S	G	R	H	K	Q	E	D	S	L	F	E	E	M	L	Q	V	A	N	A	I	.	.
Template Known Secondary structure		.	.	.	.	.	.														T										S																.	.	T	T													T	T																.	.
Template Predicted Secondary structure		.	.	.	.	.	.																																								.	.																																.	.
Template SS confidence
								143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.			.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		196	.	.	.	200	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	G	I	T	F	V	F	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	P	D	N	I	V	Y	V	M	D
Template Known Secondary structure				S
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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