Job Description P69874 Confidence 100.00% Date Thu Jan 5 12:12:15 GMT 2012 Rank 4 Aligned Residues 348 % Identity 40% Template c1vciA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sugar-binding transport atp-binding protein; PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp Resolution 2.90 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	S	P	L	V	Q	L	A	G	I	R	K	C	F	D	G	K	E	V	I	P	Q	L	D	L	T	I	N	N	G	E	F	L	T	L	L	G	P	S	G	C	G	K	T	T	V	L	R	L	I	A	G	L	E	T	V	D	S	G	R	I	M	L	D	N	E	D	I	T	H	V	P	A	E	N	R	Y	V	N
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		K	M	V	E	.	V	K	L	E	N	L	T	K	R	F	G	N	F	T	A	V	N	K	L	N	L	T	I	K	D	G	E	F	L	V	L	L	G	P	S	G	C	G	K	T	T	T	L	R	M	I	A	G	L	E	E	P	T	E	G	R	I	Y	F	G	D	R	D	V	T	Y	L	P	P	K	D	R	N	I	S
Template Known Secondary structure						.											T	T													T	T									T	T	S	S										T	S	S			S							T	T				T	T	S		G	G	G	T	T
Template Predicted Secondary structure						.
Template SS confidence
		9	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	F	Q	S	Y	A	L	F	P	H	M	T	V	F	E	N	V	A	F	G	L	R	M	Q	K	T	P	A	A	E	I	T	P	R	V	M	E	A	L	R	M	V	Q	L	E	T	F	A	Q	R	K	P	H	Q	L	S	G	G	Q	Q	Q	R	V	A	I	A	R	A	V	V	N	K	P	R	L	L	L	L	D
Query Conservation
Alig confidence						.	.	.	.	.	.														.	.
Template Conservation						.	.	.	.	.	.														.	.
Template Sequence		M	V	F	Q	.	.	.	.	.	.	H	M	T	V	Y	E	N	I	A	F	P	L	K	.	.	K	F	P	K	D	E	I	D	K	R	V	R	W	A	A	E	L	L	Q	I	E	E	L	L	N	R	Y	P	A	Q	L	S	G	G	Q	R	Q	R	V	A	V	A	R	A	I	V	V	E	P	D	V	L	L	M	D
Template Known Secondary structure						.	.	.	.	.	.										T	T			.	.																		T	T		G	G	G	T	T			G	G	G			S	S												T	T			S
Template Predicted Secondary structure						.	.	.	.	.	.														.	.
Template SS confidence
		88	.	90	.							.	.	.	.	.	.	.	.	100	.	.	.	.			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	L	S	A	L	D	Y	K	L	R	K	Q	M	Q	N	E	L	K	A	L	Q	R	K	L	G	I	T	F	V	F	V	T	H	D	Q	E	E	A	L	T	M	S	D	R	I	V	V	M	R	D	G	R	I	E	Q	D	G	T	P	R	E	I	Y	E	E	P	K	N	L	F	V	A	G	F	I	G	E	I	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	P	L	S	N	L	D	A	K	L	R	V	A	M	R	A	E	I	K	K	L	Q	Q	K	L	K	V	T	T	I	Y	V	T	H	D	Q	V	E	A	M	T	M	G	D	R	I	A	V	M	N	R	G	Q	L	L	Q	I	G	S	P	T	E	V	Y	L	R	P	N	S	V	F	V	A	T	F	I	G	A	P	E
Template Known Secondary structure		S	T	T	T	T	S																												S										S							T	T														S		S	B							S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	N	A	T	V	I	E	R	L	D	E	Q	R	V	R	A	N	V	E	G	R	E	C	N	I	Y	V	N	F	A	V	E	P	G	Q	K	L	H	V	L	L	R	P	E	D	L	R	V	E	E	I	N	D	D	N	H	A	E	G	L	I	G	Y	V	R	E	R	N	Y	K	G	M	T	L	E	S	V	V	E
Query Conservation
Alig confidence													.	.																																													.
Template Conservation													.	.																																													.
Template Sequence		M	N	I	L	E	V	S	V	G	D	G	.	.	Y	L	E	G	R	G	F	R	I	E	L	P	Q	M	D	L	L	K	D	Y	V	G	K	T	V	L	F	G	I	R	P	E	H	M	T	V	E	G	V	H	M	K	R	T	.	A	R	L	I	G	K	V	D	F	V	E	A	L	G	T	D	T	I	L	H	V	K
Template Known Secondary structure											S	S	.	.					T	T										T	T	G	G	G	B	T	S								G	G	G				S					S	S		.														S	S
Template Predicted Secondary structure													.	.																																													.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.			.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	N	G	K	M	V	M	V	S	E	F	F	N	E	D	D	P	D	F	D	H	S	L	D	Q	K	M	A	I	N	W	V	E	S	W	E	V	V	L	A	D	E	E	H	K
Query Conservation
Alig confidence												.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.
Template Sequence		F	G	D	E	L	V	K	V	K	L	.	.	.	.	.	.	P	G	H	I	P	I	E	P	G	R	E	V	K	V	I	M	D	L	D	M	I	H	V	F	D	K	D	T	E	K
Template Known Secondary structure			T	T								.	.	.	.	.	.		S						T	T									G	G	G						T	T	T		B
Template Predicted Secondary structure												.	.	.	.	.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340							.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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