Job Description P06988 Confidence 98.64% Date Thu Jan 5 10:59:46 GMT 2012 Rank 18 Aligned Residues 334 % Identity 16% Template c3r31A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystal structure of betaine aldehyde dehydrogenase from agrobacterium2 tumefaciens Resolution 2.15 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	N	S	C	T	A	E	Q	Q	R	Q	L	L	M	R	P	A	I	S	A	S	E	S	I	T	R	T	V	N	D	I	L	D	N	V	K	A	R	G	D	E	A	L	R	E	Y	S	A	K	F	D	K	T	T	V	T	A	L	K	V	S	A	E	E	I	A	A	A	S	E	R	L	S	D	E	L	K	Q	A	M
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	A	A	M	S	P	M	A	R	G	R	I	L	K	R	A	A	D	I	M	R	E	R	N	D	A	L	S	T	L	E	T	L	D	T	G	K	P	I	Q	E	T	I	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	T	S	G	A
Template Known Secondary structure					S																			T																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.																														.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.
Predicted Secondary structure																																																											.																		.	.
Query SS confidence																																																											.																		.	.
Query Sequence		A	V	A	V	K	N	I	E	T	F	H	T	A	Q	K	L	P	P	V	D	V	E	T	Q	P	G	V	R	C	Q	Q	V	T	R	P	V	A	S	V	G	L	Y	I	P	G	G	S	A	P	L	F	S	T	V	L	M	L	.	A	T	P	A	S	I	A	G	C	K	K	V	V	L	C	S	P	.	.	P	P	I
Query Conservation																																																											.																		.	.
Alig confidence																							.	.	.																					.	.	.											.																		.	.
Template Conservation																							.	.	.																					.	.	.
Template Sequence		D	A	F	E	F	F	G	G	I	A	P	S	A	L	N	G	D	Y	I	P	L	.	.	.	G	G	D	F	A	Y	T	K	R	V	P	L	G	V	C	V	G	I	G	A	.	.	.	W	N	Y	P	Q	Q	I	A	C	W	K	A	A	P	A	L	V	A	G	N	A	M	V	F	K	P	S	E	N	T	P	L	G
Template Known Secondary structure															T								.	.	.	S	S	S										S								.	.	.	S	S	S															T	T									T	T	S		S
Template Predicted Secondary structure																							.	.	.																					.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.				160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.				.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210					.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.																														.	.	.	.
Query SS confidence																		.	.	.																														.	.	.	.
Query Sequence		A	D	E	I	L	Y	A	A	Q	L	C	G	V	Q	D	V	.	.	.	F	N	V	G	G	A	Q	A	I	A	A	L	A	F	G	T	E	S	V	P	K	V	D	K	I	F	G	P	G	.	.	.	.	N	A	F	V	T	E	A	K	R	Q	V	S	Q	R	L	D	G	A	A	I	D	M	P	A	G	P	S	E
Query Conservation																		.	.	.																														.	.	.	.
Alig confidence																		.	.	.															.	.	.	.												.	.	.	.																.	.	.	.	.	.
Template Conservation																																			.	.	.	.																															.	.	.	.	.	.
Template Sequence		A	L	K	I	A	E	I	L	I	E	A	G	L	P	K	G	L	F	N	V	I	Q	G	D	R	D	T	G	P	L	L	V	N	.	.	.	.	H	P	D	V	A	K	V	S	L	T	G	S	V	P	T	G	R	K	V	A	A	A	A	A	G	H	L	K	H	V	.	.	.	.	.	.	T	M	E	L	G	G	K
Template Known Secondary structure												T	T			T	T	S								T	T							T	.	.	.	.		T	T								S															T	T				.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.	.																															.	.	.	.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.					.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.							.	.	.	.	260	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.						.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	V	I	A	D	S	G	A	T	P	D	F	V	A	S	D	L	L	S	Q	A	E	H	G	.	.	.	.	.	P	D	S	Q	V	I	L	L	T	P	A	A	D	M	A	R	R	V	A	E	A	V	E	R	Q	L	A	E	L	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																											.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.										.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.
Template Sequence		S	P	M	I	V	F	D	D	A	D	I	E	S	A	V	G	G	A	M	L	G	N	F	Y	S	S	G	Q	V	C	S	N	G	T	R	V	F	V	Q	.	.	K	K	A	K	A	R	F	L	E	N	L	K	R	R	T	E	A	M	I	L	G	D	P	L	D	Y	A	T	H	L	G	P	L	V	S	K	A	Q	Q
Template Known Secondary structure								T	T	S														T	S							T	T								.	.	G	G	G																	B			T	T	S	T	T		S	B			B	S
Template Predicted Secondary structure																																									.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
					295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310																																													.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	A	E	T	A	R	Q	A	L	N	A	S	R	L	I	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	D	L	A	Q	C	V	E	I	S	N	Q	Y	G	P	E	H
Query Conservation		.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	K	V	L	S	Y	I	E	K	G	K	A	E	G	A	T	L	I	T	G	G	G	I	P	N	N	V	A	G	E	G	A	Y	V	Q	P	T	V	F	A	D	V	T	D	D	M	T	I	A	R	E	E	I	F	G	P	V	M	C	V	L	D	F	D	D	E	D	E	V	L	A	R	A	N	A	T	E	F	G	L
Template Known Secondary structure															T								S			S	S			S	S	S	B												T	T	S					S			S	S	S																				S	S			S
Template Predicted Secondary structure
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
			328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.			.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure		.																		.	.
Query SS confidence		.																		.	.
Query Sequence		.	L	I	I	Q	T	R	N	A	R	E	L	V	D	S	I	T	S	.	.	A	G	S	V	F	L	G	D	W	S	P	E	S	A	G	D	Y	A	S	G	T	N	H	V	L	P	T	Y	G	Y	T	A	T	C	S	S	L	G	L	A	D	F	Q	K	R	M	T	V	Q
Query Conservation		.																		.	.
Alig confidence		.																		.	.																								.	.	.	.
Template Conservation																																													.	.	.	.
Template Sequence		A	G	G	V	F	T	A	D	L	A	R	A	H	R	V	V	D	G	L	E	A	G	T	L	W	I	N	T	Y	N	L	C	P	V	E	I	P	F	G	G	S	K	Q	.	.	.	.	S	G	F	G	R	E	N	S	A	A	A	L	E	H	Y	S	E	L	K	T	V	Y
Template Known Secondary structure								S												S			S					S	S						T	T	S		B					T	.	.	.	.	T					B	S	T	G	G	G	G	G	G	S
Template Predicted Secondary structure																																													.	.	.	.
Template SS confidence
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.					.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.