Job Description P06988 Confidence 98.72% Date Thu Jan 5 10:59:46 GMT 2012 Rank 14 Aligned Residues 343 % Identity 16% Template c3prlD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:nadp-dependent glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of nadp-dependent glyceraldehyde-3-phosphate2 dehydrogenase from bacillus halodurans c-125 Resolution 2.00 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	N	S	C	T	A	E	Q	Q	R	Q	L	L	M	R	P	A	I	S	A	S	E	S	I	T	R	T	V	N	D	I	L	D	N	V	K	A	R	G	D	E	A	L	R	E	Y	S	A	K	F	D	K	T	T	V	T	A	L	K	V	S	A	E	E	I	A	A	A	S	E	R	L	S	D	E	L	K	Q	A	M
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Sequence		W	K	I	R	P	I	H	E	R	V	D	L	L	Y	A	W	A	D	L	L	E	E	R	K	E	I	I	G	E	L	I	M	H	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	K	P	K	K	S	A	I	G	E	V	.	S	R	T	A	D	I	I
Template Known Secondary structure			T	T	S																			T												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S												.
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.																											.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.
Predicted Secondary structure																																																					.																								.	.
Query SS confidence																																																					.																								.	.
Query Sequence		A	V	A	V	K	N	I	E	T	F	H	T	A	Q	K	L	P	P	V	D	V	E	T	Q	P	G	V	R	C	Q	Q	V	T	R	P	V	A	S	V	G	L	Y	I	P	G	G	S	A	P	L	F	.	S	T	V	L	M	L	A	T	P	A	S	I	A	G	C	K	K	V	V	L	C	S	P	.	.	P	P	I
Query Conservation																																																					.																								.	.
Alig confidence																																														.	.	.					.																								.	.
Template Conservation																																														.	.	.
Template Sequence		R	H	T	A	D	E	A	L	R	L	N	G	E	T	L	K	G	D	Q	F	K	G	G	S	S	K	K	I	A	L	V	E	R	E	P	L	G	V	V	L	A	I	S	P	.	.	.	F	N	Y	P	V	N	L	A	A	A	K	I	A	P	A	L	V	T	G	N	T	V	V	F	K	P	A	T	Q	G	S	L	S
Template Known Secondary structure									T	T								G	G	G	S	T	T			T	T											S								.	.	.	S	S	S	T	T													T	T									S	T	T
Template Predicted Secondary structure																																														.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.				.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180					.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		A	D	E	I	L	Y	A	A	Q	L	C	G	V	Q	D	.	.	.	.	V	F	N	V	G	G	A	Q	A	I	A	A	L	A	F	G	T	E	S	V	P	K	V	D	K	I	F	G	P	G	N	A	F	V	T	E	A	K	R	Q	V	S	Q	R	L	D	G	A	A	I	D	M	P	A	G	P	S	E	V	L	V
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.																.	.	.	.																											.	.	.	.
Template Conservation																																				.	.	.	.																											.	.	.	.
Template Sequence		G	I	K	M	V	E	A	L	A	D	A	G	A	P	E	G	I	I	Q	V	V	T	G	R	G	S	V	I	G	D	H	L	V	E	.	.	.	.	H	P	G	I	D	M	I	T	F	T	G	G	T	T	T	G	E	R	I	S	E	K	A	K	M	I	.	.	.	.	P	V	V	L	E	L	G	G	K	D	P	A
Template Known Secondary structure												T	T			T	T	S								S	S	S	S						T	.	.	.	.		T	T								S														S	S	.	.	.	.
Template Predicted Secondary structure																																				.	.	.	.																											.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.					.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.					.	.	.	.	.	260	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.					.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.																						.	.
Predicted Secondary structure																										.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	A	D	S	G	A	T	P	D	F	V	A	S	D	L	L	S	Q	A	E	H	G	P	D	.	.	.	.	S	Q	V	I	L	L	T	P	A	A	D	M	A	R	R	V	A	E	A	V	E	R	Q	L	A	E	L	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E
Query Conservation																										.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.									.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.
Template Sequence		I	V	L	D	D	A	D	L	K	L	T	A	S	Q	I	V	S	G	A	F	S	Y	S	G	Q	R	C	T	A	I	K	R	V	F	V	Q	.	D	S	V	A	D	Q	L	V	A	N	I	K	E	L	V	E	Q	L	T	V	G	S	P	E	D	D	A	D	I	T	P	V	I	D	E	K	S	A	A	F	I	Q	G
Template Known Secondary structure					T	T																G	G	G	G			S	S	S								.																T	T			B	S		G	G	G	T		S	B				S
Template Predicted Secondary structure																																						.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		297	.	.	300	.	.	.	.																																							.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.										.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.										.
Query Sequence		T	A	R	Q	A	L	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	L	I	V	T	K	D	L	A	Q	C	V	E	I	S	N	Q	Y	G	P	E	H	.	L	I	I	Q	T	R	N	A	R	.
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.										.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.										.
Template Conservation
Template Sequence		L	I	D	D	A	L	E	N	G	A	T	L	L	S	G	N	K	R	Q	G	N	L	L	S	P	T	L	L	D	D	V	T	P	A	M	R	V	A	W	E	E	P	F	G	P	V	L	P	I	I	R	V	K	D	A	N	E	A	I	S	L	S	N	Q	S	D	Y	G	L	Q	A	S	I	F	T	K	D	T	D	R
Template Known Secondary structure									T	T											T	T									S			T	T	S	G	G	G	T	S				S	S								S	S											S	S			S							S
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
			337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	E	L	V	D	S	I	T	S	A	G	S	V	F	L	G	D	W	S	P	E	S	A	G	D	Y	A	S	G	T	N	H	V	L	P	T	Y	G	Y	T	A	T	C	S	S	L	G	L	A	D	F	Q	K	R	M	T	V	Q
Query Conservation		.
Alig confidence		.																														.	.	.
Template Conservation																																.	.	.
Template Sequence		A	I	N	I	G	K	H	L	E	V	G	T	V	H	I	N	A	K	T	E	R	G	P	D	H	F	P	F	L	G	.	.	.	V	K	K	S	G	L	G	V	Q	G	I	K	P	S	L	L	S	M	T	R	E	R	V	T	V
Template Known Secondary structure								T	S		S	S					S	S				S		S	T	T	S		B			.	.	.		G	G	G			S		B	S								T
Template Predicted Secondary structure																																.	.	.
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.				.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480