Job Description P06988 Confidence 98.79% Date Thu Jan 5 10:59:46 GMT 2012 Rank 7 Aligned Residues 336 % Identity 17% Template c3efvC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:putative succinate-semialdehyde dehydrogenase; PDBTitle: crystal structure of a putative succinate-semialdehyde dehydrogenase2 from salmonella typhimurium lt2 with bound nad Resolution 1.90 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	N	S	C	T	A	E	Q	Q	R	Q	L	L	M	R	P	A	I	S	A	S	E	S	I	T	R	T	V	N	D	I	L	D	N	V	K	A	R	G	D	E	A	L	R	E	Y	S	A	K	F	D	K	T	T	V	T	A	L	K	V	S	A	E	E	I	A	A	A	S	E	R	L	S	D	E	L	K	Q	A	M
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	K	X	T	S	V	A	Q	R	A	Q	T	L	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	Q	A	L	R	A	H	A	E	E	X	A	Q	C	I	T	R	E	X	G	K	P	I	K	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	E	V
Template Known Secondary structure			T	T	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.																60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.																				.	.	.	90
		89	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.
Predicted Secondary structure																.																																						.																								.	.
Query SS confidence																.																																						.																								.	.
Query Sequence		A	V	A	V	K	N	I	E	T	F	H	T	A	Q	.	K	L	P	P	V	D	V	E	T	Q	P	G	V	R	C	Q	Q	V	T	R	P	V	A	S	V	G	L	Y	I	P	G	G	S	A	P	L	F	.	S	T	V	L	M	L	A	T	P	A	S	I	A	G	C	K	K	V	V	L	C	S	P	.	.	P	P
Query Conservation																.																																						.																								.	.
Alig confidence																.																															.	.	.					.																								.	.
Template Conservation																																															.	.	.
Template Sequence		T	K	S	A	A	L	C	D	W	Y	A	E	H	G	P	A	X	L	N	P	E	P	T	L	V	E	N	Q	Q	A	V	I	E	Y	R	P	L	G	V	I	L	A	I	X	P	.	.	.	W	N	F	P	L	W	Q	V	L	R	G	A	V	P	I	L	L	A	G	N	S	Y	L	L	K	H	A	P	N	V	T	G
Template Known Secondary structure																			T	S					S	S	G	G	G																		.	.	.	S	S	S	T	T													T	T									G	G	G
Template Predicted Secondary structure																																															.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.							.	.																																	.	.
Query SS confidence																.							.	.																																	.	.
Query Sequence		I	A	D	E	I	L	Y	A	A	Q	L	C	G	V	.	Q	D	V	F	N	V	.	.	G	G	A	Q	A	I	A	A	L	A	F	G	T	E	S	V	P	K	V	D	K	I	F	G	P	G	N	A	F	V	T	E	.	.	A	K	R	Q	V	S	Q	R	L	D	G	A	A	I	D	M	P	A	G	P	S	E	V
Query Conservation																.							.	.																																	.	.
Alig confidence																.							.	.												.	.	.	.																		.	.										.	.	.	.
Template Conservation																																				.	.	.	.																													.	.	.	.
Template Sequence		C	A	Q	X	I	A	R	I	L	A	E	A	G	T	P	A	G	V	Y	G	W	V	N	A	N	N	E	G	V	S	Q	X	I	N	.	.	.	.	D	P	R	I	A	A	V	T	V	T	G	S	V	R	A	G	A	A	I	G	A	Q	A	G	A	A	L	K	.	.	.	.	K	C	V	L	E	L	G	G	S	D
Template Known Secondary structure													T	T			B	T	T																T	.	.	.	.	S	T	T								S															T	T		.	.	.	.
Template Predicted Secondary structure																																				.	.	.	.																													.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.					230	.	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.					.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																												.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	V	I	A	D	S	G	A	T	P	D	F	V	A	S	D	L	L	S	Q	A	E	H	G	P	D	.	.	.	.	S	Q	V	I	L	L	T	P	A	A	D	M	A	R	R	V	A	E	A	V	E	R	Q	L	A	E	L	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																												.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.									.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.
Template Sequence		P	F	I	V	L	N	D	A	D	L	E	L	A	V	K	A	A	V	A	G	R	Y	Q	N	T	G	Q	V	C	A	A	A	K	R	F	I	V	E	.	E	G	I	A	Q	A	F	T	D	R	F	V	A	A	A	A	A	L	K	X	G	D	P	L	V	E	E	N	D	L	G	P	X	A	R	F	D	L	R	D	E
Template Known Secondary structure							T	T	S															G	G	G	G			T	T									.																				B	S		T	T	S	T	T		S	B				S
Template Predicted Secondary structure																																								.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
			295	.	.	.	.	300	.	.	.	.	.																																										.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.
Predicted Secondary structure		.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Query SS confidence		.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Query Sequence		.	A	E	T	A	R	Q	A	L	N	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	I	V	T	K	D	L	A	Q	C	V	E	I	S	N	Q	Y	G	P	E	H	.	L	I	I	Q
Query Conservation		.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Alig confidence		.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation
Template Sequence		L	H	Q	Q	V	Q	A	S	V	A	E	G	A	R	L	L	L	G	G	E	K	I	A	G	E	G	N	Y	Y	A	A	T	V	L	A	D	V	T	P	D	X	T	A	F	R	Q	E	L	F	G	P	V	A	A	I	T	V	A	K	D	A	A	H	A	L	A	L	A	N	D	S	E	F	G	L	S	A	T	I	F
Template Known Secondary structure													T								S	B		S	S	S	S			B							S			T	T	S					S				S	S								S	S											S	S			S
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		332	.	.	.	.	.	.	.	340	.	.	.	.			.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		T	R	N	A	R	E	L	V	D	S	I	T	S	.	.	A	G	S	V	F	L	G	D	W	S	P	E	S	A	G	D	Y	A	S	G	T	N	H	V	L	P	T	Y	G	Y	T	A	T	C	S	S	L	G	L	A	D	F	Q	K	R	M	T	V	Q	E
Query Conservation															.	.
Alig confidence															.	.																					.	.	.	.
Template Conservation																																					.	.	.	.
Template Sequence		T	A	D	D	T	L	A	A	E	X	A	A	R	L	E	C	G	G	V	F	I	N	G	Y	S	A	S	D	A	R	V	A	F	G	G	.	.	.	.	V	K	K	S	G	F	G	R	E	L	S	H	F	G	L	H	E	F	C	N	V	Q	T	V	W	K
Template Known Secondary structure			S														S	S					S	S						T	T	S		B			.	.	.	.	S	G	G	G					B	S							T	T
Template Predicted Secondary structure																																					.	.	.	.
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.					.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.