Job Description P06988 Confidence 97.93% Date Thu Jan 5 10:59:46 GMT 2012 Rank 44 Aligned Residues 356 % Identity 13% Template c2h5gA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:delta 1-pyrroline-5-carboxylate synthetase; PDBTitle: crystal structure of human pyrroline-5-carboxylate synthetase Resolution 2.25 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	N	S	C	T	A	E	Q	Q	R	Q	L	L	M	R	P	A	I	S	A	S	E	S	I	T	R	T	V	N	D	I	L	D	N	V	K	A	R	G	D	E	A	L	R	E	Y	S	A	K	F	D	K	T	T	V	T	A	L	K	V	S	A	E	E	I	A	A	A	S	E	R	L	S	D	E	L	K	Q	A	M
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Sequence		L	A	T	L	E	P	E	Q	R	A	E	I	I	H	H	L	A	D	L	L	T	D	Q	R	D	E	I	L	L	A	N	K	K	D	L	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	G	R	L	A	A	P	L	L	K	.	R	L	S	L	S	T	S	K	L	N	S	L	A
Template Known Secondary structure					S																			T															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T	S							.	T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.																			.	.	.	.	.	.	420	.	.	.	.		.	.	.	.	.	430	.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	A	V	K	N	I	E	T	F	H	T	A	Q	K	L	P	P	V	D	V	E	T	Q	P	G	V	R	C	Q	Q	V	T	R	P	V	A	S	V	G	L	Y	I	P	G	G	S	A	P	L	F	S	T	V	L	M	L	A	T	P	A	S	I	A	G	C	K	K	V	V	L	C	S	P	P	P	I	A	D	E
Query Conservation
Alig confidence																																														.	.	.	.
Template Conservation																																														.	.	.	.
Template Sequence		I	G	L	R	Q	I	A	A	S	S	Q	D	S	V	G	R	V	L	R	R	T	R	I	A	K	N	L	E	L	E	Q	V	T	V	P	I	G	V	L	L	V	I	F	E	.	.	.	.	S	R	P	D	C	L	P	Q	V	A	A	L	A	I	A	S	G	N	G	L	L	L	K	G	G	K	E	A	A	H	S	N
Template Known Secondary structure												T	T	S	T	T										T	T																		S	.	.	.	.	S		T	T													T									G	G	G
Template Predicted Secondary structure																																														.	.	.	.
Template SS confidence
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.					.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	Y	A	A	Q	L	C	G	V	Q	D	V	F	N	V	G	G	A	Q	A	I	A	A	L	A	F	G	T	E	S	V	P	K	V	D	K	I	F	G	P	G	N	A	F	V	T	E	A	K	R	Q	V	S	Q	R	L	D	G	A	A	I	D	M	P	A	G	P	S	E	V	L	V	I	A	D	S	G	A	T
Query Conservation
Alig confidence									.	.	.																																																.	.	.															.
Template Conservation									.	.	.																																																.	.	.															.
Template Sequence		R	I	L	H	L	L	T	.	.	.	Q	E	A	L	S	I	H	G	V	K	E	A	V	Q	L	V	N	T	R	E	E	V	K	X	I	D	L	I	I	P	R	G	S	S	Q	L	V	R	D	I	Q	K	A	A	K	G	I	.	.	.	P	V	X	G	H	S	E	G	I	C	H	X	Y	V	.	D	S	E	A	S
Template Known Secondary structure									.	.	.						T	T	T		G	G	G						T	T							S						S													S	S	S	.	.	.		B		S		S									.		T	T
Template Predicted Secondary structure									.	.	.																																																.	.	.															.
Template SS confidence
		514	.	.	.	.	.	520				.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.				.	.	570	.	.	.	.	.	.	.	.	.	580	.		.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.				.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.						.	.	.	.	.	.	300	.	.			.		.	.	.	.	.				.	310	.	.	.	.
Predicted Secondary structure																			.	.	.																													.	.	.	.	.										.	.		.						.	.	.
Query SS confidence																			.	.	.																													.	.	.	.	.										.	.		.						.	.	.
Query Sequence		P	D	F	V	A	S	D	L	L	S	Q	A	E	H	G	P	D	.	.	.	S	Q	V	I	L	L	T	P	A	A	D	M	A	R	R	V	A	E	A	V	E	R	Q	L	A	E	L	P	.	.	.	.	.	R	A	E	T	A	R	Q	A	L	.	.	N	.	A	S	R	L	I	.	.	.	V	T	K	D	L	A
Query Conservation																			.	.	.																													.	.	.	.	.										.	.		.						.	.	.
Alig confidence																			.	.	.																													.	.	.	.	.										.	.		.						.	.	.
Template Conservation
Template Sequence		V	D	K	V	T	R	L	V	R	D	S	K	C	E	Y	P	A	A	C	N	A	L	E	T	L	L	I	H	R	D	L	L	R	T	P	L	F	D	Q	I	I	D	X	L	R	V	E	Q	V	K	I	H	A	G	P	K	F	A	S	K	S	L	R	T	E	Y	G	D	L	E	L	C	I	E	V	V	D	N	V	Q
Template Known Secondary structure		T	T	T											S		T	T	S	T	T	S								G	G	G	T	T	S													T	T														S	S					S	S								S	S
Template Predicted Secondary structure
Template SS confidence
		594	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.			.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure															.																		.	.
Query SS confidence															.																		.	.
Query Sequence		Q	C	V	E	I	S	N	Q	Y	G	P	E	H	.	L	I	I	Q	T	R	N	A	R	E	L	V	D	S	I	T	S	.	.	A	G	S	V	F	L	G	D	W	S	P	E	S	A	G	D	Y	A	S	G	T	N	H	V	L	P	T	Y	G	Y	T	A	T	C	S	S	L	G	L	A	D	F	Q	K	R	M	T
Query Conservation															.																		.	.
Alig confidence															.																		.	.
Template Conservation
Template Sequence		D	A	I	D	H	I	H	K	Y	G	S	S	H	T	D	V	I	V	T	E	D	E	N	T	A	E	F	F	L	Q	H	V	D	S	A	C	V	F	W	N	A	S	T	R	F	S	D	G	Y	R	F	G	L	G	A	E	V	G	I	S	T	S	R	I	H	A	R	G	P	V	G	L	E	G	L	L	T	T	K	W
Template Known Secondary structure													S	S							S														S	S					S	S		G	G	G		S	T	T	T	T	T	S	S			S						S	S	S							G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		683	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.
		392	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		763	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions