 |
Job Description | P06988 | Confidence | 17.10% | Date | Thu Jan 5 10:59:46 GMT 2012 |
Rank | 87 | Aligned Residues | 72 |
% Identity | 13% | Template | c1txtB_ |
PDB info |
PDB header:lyase | Chain: B: PDB Molecule:3-hydroxy-3-methylglutaryl-coa synthase; |
PDBTitle: staphylococcus aureus 3-hydroxy-3-methylglutaryl-coa2 synthase
|
Resolution | 2.50 Å |
|
 |
  |   |
124 | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | |
. | . | 150 | . | . | |
|
|
. | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |
| . | . | . |
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | A | S | V | G | L | Y | I | P | G | G | S | A | P | L | F | S | T | V | L | M | L | A | T | . |
P | A | S | I | A | . |
. |
. |
G | C | K | K | V | V | L | C | S | P | P | P | I | A | D | E | I | L | Y | A | A | Q | L | C | G | V | Q | D | V | F | N | V | G | G | A | Q | A | I | A | A | L | A | F | G | T | E | S |
Query Conservation |   |
|   |
|
|
|   |
|
|
|
|
|   |
|   |
|
|
|
|
|
|
|   |   |
| . |
|
|
|
|
| . | . | . |
|
|   |   |
|
|   |   |
|
|
|   |
|   |
|   |
|
|   |
|
|   |
|   |
|
|   |   |
|
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |
|   |
|   |   |   |
|   |   |   |
|
|   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |
|
|   |   |
|   |
|   |   |   | . |   |
|
|   |   |
|
|
|   |   |
|
|   |   |
|
|   |   |   | . | . | . |
|
|   |   |
|
|   |
|
|
|   |
|   |
|
Template Sequence |   |
I | D | K | I | N | F | Y | V | P | K | Y | Y | V | D | M | A | K | L | A | E | A | R | Q | V | D | P | N | K | F | L | I | G | I | G | Q | T | E | M | A | V | S | P | V | . |
N | Q | D | I | V | S | M | G | A | N | A | A | K | D | I | I | T | D | E | . |
. |
. |
D | K | K | K | I | G | M | V | I | V | A | T | E | S |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  | T | T | S |
|  |  |  |  |  | T | T | T |
|
|
|  |  |  |  |
|
| T | . | T |
|
|  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
| S | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|  |  |
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
| . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . |
|  |  |  |
|
|  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | |
. | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | |
|
|
. | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|