Job Description P37388 Confidence 99.40% Date Thu Jan 5 11:55:35 GMT 2012 Rank 76 Aligned Residues 267 % Identity 16% Template c3cmvG_ PDB info PDB header:recombination Chain: G: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures Resolution 4.30 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	C	L	R	L	N	A	G	E	I	V	S	L	C	G	E	N	G	S	G	K	S	T	L	M	K	V	L	C	G	I	Y	P	H	G	S	Y	E	G	E	I	I	F	A	G	E	E	I	Q	A	S	H	I	R	D	T	E	R	K	G	I	A	I	I	H	Q	E	L	A	L	V	K	E	L	T	V	L	E	N	I
Query Conservation
Alig confidence																																				.																						.	.	.	.
Template Conservation																																				.																						.	.	.	.
Template Sequence		G	A	G	G	L	P	M	G	R	I	V	E	I	Y	G	P	E	S	S	G	K	T	T	L	T	L	Q	V	I	A	A	A	Q	R	.	E	G	K	T	C	A	F	I	D	A	E	H	A	L	D	P	I	Y	A	R	K	.	.	.	.	L	G	V	D	I	D	N	L	L	C	S	Q	P	D	T	G	E	Q	A	L
Template Known Secondary structure		S	S	S	S			T	T	S							S	T	T	S	S														T	.	T	T								S	S											.	.	.	.		T			G	G	G							S
Template Predicted Secondary structure																																				.																						.	.	.	.
Template SS confidence
		1052	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.		.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.					.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.																					.	.	.	.	.	.	.	120	.	.	.	.	.	.																					.	.	.	130	.	.	.	.	.		.	.	.	.	140	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Query Sequence		F	L	G	N	E	I	T	H	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	M	D	Y	D	L	M	T	L	R	C	Q	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	Q	V	S	L	S	I	S	.	P	D	T	R	V	G
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation
Template Sequence		E	I	C	D	A	L	A	R	S	G	A	V	D	V	I	V	V	D	S	V	A	A	L	T	P	K	A	E	I	E	G	L	A	A	R	M	M	S	Q	A	M	R	K	L	A	G	N	L	K	Q	S	N	T	L	L	I	F	I	N	Q	G	G	N	A	L	K	F	Y	A	S	V	R	L	D	I	R	R	I	G	A
Template Known Secondary structure									T	T	S	S									G	G	G											T	T																T	T	T											T	T						S
Template Predicted Secondary structure
Template SS confidence
		1127	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																					.	.																																																								.	.	.	.
Query SS confidence																					.	.																																																								.	.	.	.
Query Sequence		D	L	G	L	G	Q	Q	Q	L	V	E	I	A	K	A	L	N	K	Q	.	.	V	R	L	L	I	L	D	E	P	T	A	S	L	T	E	Q	E	T	S	I	L	L	D	I	I	R	D	L	Q	Q	H	G	I	A	C	I	Y	I	S	H	K	L	N	E	V	K	A	I	S	D	T	I	C	V	I	.	.	.	.
Query Conservation																					.	.																																																								.	.	.	.
Alig confidence																					.	.												.														.	.	.	.																	.										.	.	.	.
Template Conservation																																		.														.	.	.	.																	.
Template Sequence		V	K	E	G	E	N	V	V	G	S	E	T	R	V	K	V	V	K	N	K	I	A	A	P	F	K	Q	A	E	F	Q	I	.	L	Y	G	E	G	I	N	F	Y	G	E	L	V	.	.	.	.	D	L	G	V	K	E	K	L	I	E	K	A	G	A	W	Y	.	S	Y	K	G	E	K	I	G	Q	G	K	A	N
Template Known Secondary structure					T	T															S	S	S		T	T								.		T	T	T										.	.	.	.						T	T	S	S				T	T			.			T	T
Template Predicted Secondary structure																																		.														.	.	.	.																	.
Template SS confidence
		1231	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.		.	.	.	.	.	.	.	1270	.	.	.	.	.					.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.		.	.	.	.	.	.	.	.	1300	.	.	.	.
				216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure		.	.																																																																					.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																																																																					.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	R	D	G	Q	H	I	G	T	R	D	A	A	G	M	S	E	D	D	I	I	T	M	M	V	G	R	E	L	T	A	L	Y	P	N	E	P	H	T	T	G	D	E	I	L	R	I	E	H	L	T	A	W	H	P	V	N	R	H	I	K	R	V	N	D	V	S	F	S	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.																																																																					.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																																						.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.
Template Sequence		A	T	A	W	L	K	D	N	P	E	T	A	K	E	I	E	K	K	V	R	E	L	L	L	K	Q	K	A	L	A	A	A	L	G	Q	I	E	K	Q	F	G	K	G	S	I	M	R	L	G	E	D	R	S	M	D	.	.	.	.	.	.	.	.	V	E	T	I	S	T	G	S	L	S	L	D	I	A	L	G	A
Template Known Secondary structure							T	T	S																																S	S	T	T					T	T							.	.	.	.	.	.	.	.							S									S	S
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.
Template SS confidence
		1305	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.									1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.
				284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	L	K	R	G	E	I	L	G	I	A	G	L	V	G	A	G	R	T	E	T	I	Q	C	L	F
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		G	G	L	P	M	G	R	I	V	E	I	Y	G	P	E	S	S	G	K	T	T	L	T	L	Q	V	I
Template Known Secondary structure		S	S			T	T	S							S	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		2054	.	.	.	.	.	2060	.	.	.	.	.	.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions